KEGG   Humibacter ginsenosidimutans: FPZ11_01545
Entry
FPZ11_01545       CDS       T06119                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
huw  Humibacter ginsenosidimutans
Pathway
huw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:huw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FPZ11_01545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:huw03400]
    FPZ11_01545
Enzymes [BR:huw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FPZ11_01545
DNA repair and recombination proteins [BR:huw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FPZ11_01545
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QDZ13654
UniProt: A0A5B8M140
LinkDB
Position
complement(313136..315568)
AA seq 810 aa
MGATKTDDTARTSGPQVVEVDGHRLKLTNLDKVLYPATGTTKADVLAYYAQIAPLLIGHA
HDRPATRKRWVNGVGTAEHPEQAFFQKNLDEGTPDWVPRVSIQHKDHANVYPLVNEPAVL
AWFGQIAALEIHVPQWQVGPRGARRNPDRLVLDLDPGEGVGLRECAQVAAWARDILADMG
LEPVPVTSGSKGIHLYARLDGAQTSDQASAVARELARALEADHRDEVISTMKRVDRAGKV
FIDWSQNNAGKTTVAPYSLRGREHPTVAAPRTWRELASPKLRQLGYAEVLDRVEKKGDPL
ADASTASTKQGGDAHGAEKSADRDRLTVYRSKRDAAKTPEPVPAGTPATTSGRSFVIQKH
AARRLHYDFRLERDGVLVSWALPKGVPETTKQNHLAVHVEDHPLDYGGFEGDIPHGEYGA
GHVDIWDSGVYDLEKWREGEEVIVTLHPSHDGGLGGKPVKVALIHTGGSGGRGAKDEKNW
LIHRMAVDRVRKDYSPMLATLGSQQQLEHDEARWAFEGKWDGIRAIAYVHDGAVRLVTRS
GNDVTAQYPELTGIADSVRSPVVLDGEIVALNDGRPDFGLLQQRMNLQNEAEISRVASRV
PVRYYAFDVLELDGHDITGAEYEVRRAALEHVLTDRHRGVAQVPDAVEGPIGAAMDRSRR
DGLEGIVAKELRSTYAAGKRSASWIKVKHHGTQEVVIGGWKPGEGRRENGVGSLLMGIPN
GDALTYVGKVGTGFGDAELDEIARRLGAVEATRSPFDDVPATDARGVHWVTPTLVGEVEF
AEWTKGGRLRQPSWRGWRTDKEPKDVVRES
NT seq 2433 nt   +upstreamnt  +downstreamnt
atgggggcgacgaagacagacgacacggcgcgcacgagcgggcctcaggtggtcgaggtc
gacgggcatcggctgaagctgaccaacctcgacaaggtgctgtatccggcgaccggcacg
accaaggcggacgtgctggcctactacgcgcagatcgcaccgctgctcatcgggcacgcg
cacgaccggccggccacgcgcaaacgctgggtgaacggggtgggcacggcggagcatccc
gagcaggcgttctttcagaagaacctcgacgagggcacgccggactgggtgccgcgcgtg
agcattcagcacaaggaccacgcgaacgtgtacccgctggtgaacgagccggccgtgctg
gcctggttcgggcagatcgccgcactggagatccacgttccgcagtggcaggtcgggcct
cgcggggcgaggcgcaaccccgaccggctggtgctcgacctcgaccccggcgagggggtc
gggctgagggagtgcgctcaggtggcggcatgggcgcgcgacatcctcgccgacatgggg
ctcgaaccggtgccggtgaccagcgggagcaagggcatccatctttacgcgcggctggac
ggagcccagacctccgatcaggcgtcggcggtggcgcgcgagctcgcccgtgcgctggag
gctgaccaccgcgacgaggtgatcagcacgatgaaacgtgtcgaccgcgccggcaaggtg
ttcatcgactggagtcagaacaacgcaggcaagacgacggtggcgccgtattcgttgcgc
ggaagggagcatcccactgtcgccgccccgcgcacgtggcgcgagctcgcgtcgccgaag
ctgcgacagctcggctacgcggaggtgctcgaccgggtggagaagaagggcgacccgttg
gcggatgcctcgaccgcgtcgacgaagcagggcggtgatgcgcacggggcagagaagagt
gccgaccgcgaccgcctgaccgtgtatcgcagcaaacgggacgccgccaagacgccggag
ccggtgccggccggcacgccagccacgacgtccggccgctccttcgtgatccagaagcac
gccgcgcgccgcctgcactacgacttcaggctcgaacgcgacggcgtgctggtgagctgg
gcgttgcccaagggtgtgccggagaccacgaagcagaaccacctggcggtgcacgtcgag
gaccacccgctcgactacggcgggttcgagggagacattccgcacggggaatacggtgcg
ggccacgtggatatctgggactcgggggtctacgacctcgagaagtggcgcgagggcgag
gaggtgatcgtcaccctgcacccgtcgcacgacggcggcctcggcggcaagccggtgaag
gtggcgctgatccacaccggcgggtcgggcggccgtggggcgaaggacgagaagaactgg
ctgatccaccgcatggccgtggatcgtgtgcgcaaggactactcccccatgctcgccacg
ctcggcagccagcagcagttggagcacgacgaggcgaggtgggcgttcgagggcaagtgg
gacggcatccgtgccatcgcctatgtgcacgacggcgcggtgcggctggtgacccgaagc
ggcaatgacgtgaccgcgcagtaccccgagttgaccgggatcgccgactccgtgcgctcc
cccgtcgtgctcgacggcgagatcgtcgcgctgaacgacggacgtcccgacttcggactg
ctgcagcagcgcatgaacctgcagaacgaggccgagatctcgcgcgtcgcctcgcgggtt
ccggtgcgctactacgcgttcgacgttctcgagctcgacggacacgacatcaccggcgcg
gagtacgaggtgcgccgcgccgcgctcgaacacgtgctgacggacaggcaccgcggggtg
gcgcaggttccggatgccgtggagggtcccatcggggccgcgatggaccgcagccgtcga
gacggcctggagggcatcgtggcgaaggagctgcggtccacgtacgcggcaggcaagcgc
tccgcgtcgtggatcaaggtgaagcaccacggcacgcaggaggtcgtcatcggcgggtgg
aagccgggcgaagggcgacgcgagaacggagtcggttcgctgctgatgggcatcccgaac
ggcgacgcgctgacctacgtcggcaaggtgggcaccgggttcggcgacgccgagctcgat
gagatcgctcggcgtctgggtgccgtcgaggcgacgcggtcaccgttcgacgacgtgccc
gcgacggatgcccgtggcgtgcactgggtgacgccgacactcgtcggcgaggtggagttc
gccgagtggacgaagggcggacgcctgcggcagccgtcgtggcgcggatggcgcaccgac
aaggagccgaaggacgtggtgcgcgagagctga

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