Humibacter ginsenosidimutans: FPZ11_01545
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Entry
FPZ11_01545 CDS
T06119
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FPZ11_01545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
huw03400
]
FPZ11_01545
Enzymes [BR:
huw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FPZ11_01545
DNA repair and recombination proteins [BR:
huw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FPZ11_01545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QDZ13654
UniProt:
A0A5B8M140
LinkDB
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Position
complement(313136..315568)
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AA seq
810 aa
AA seq
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MGATKTDDTARTSGPQVVEVDGHRLKLTNLDKVLYPATGTTKADVLAYYAQIAPLLIGHA
HDRPATRKRWVNGVGTAEHPEQAFFQKNLDEGTPDWVPRVSIQHKDHANVYPLVNEPAVL
AWFGQIAALEIHVPQWQVGPRGARRNPDRLVLDLDPGEGVGLRECAQVAAWARDILADMG
LEPVPVTSGSKGIHLYARLDGAQTSDQASAVARELARALEADHRDEVISTMKRVDRAGKV
FIDWSQNNAGKTTVAPYSLRGREHPTVAAPRTWRELASPKLRQLGYAEVLDRVEKKGDPL
ADASTASTKQGGDAHGAEKSADRDRLTVYRSKRDAAKTPEPVPAGTPATTSGRSFVIQKH
AARRLHYDFRLERDGVLVSWALPKGVPETTKQNHLAVHVEDHPLDYGGFEGDIPHGEYGA
GHVDIWDSGVYDLEKWREGEEVIVTLHPSHDGGLGGKPVKVALIHTGGSGGRGAKDEKNW
LIHRMAVDRVRKDYSPMLATLGSQQQLEHDEARWAFEGKWDGIRAIAYVHDGAVRLVTRS
GNDVTAQYPELTGIADSVRSPVVLDGEIVALNDGRPDFGLLQQRMNLQNEAEISRVASRV
PVRYYAFDVLELDGHDITGAEYEVRRAALEHVLTDRHRGVAQVPDAVEGPIGAAMDRSRR
DGLEGIVAKELRSTYAAGKRSASWIKVKHHGTQEVVIGGWKPGEGRRENGVGSLLMGIPN
GDALTYVGKVGTGFGDAELDEIARRLGAVEATRSPFDDVPATDARGVHWVTPTLVGEVEF
AEWTKGGRLRQPSWRGWRTDKEPKDVVRES
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgacgaagacagacgacacggcgcgcacgagcgggcctcaggtggtcgaggtc
gacgggcatcggctgaagctgaccaacctcgacaaggtgctgtatccggcgaccggcacg
accaaggcggacgtgctggcctactacgcgcagatcgcaccgctgctcatcgggcacgcg
cacgaccggccggccacgcgcaaacgctgggtgaacggggtgggcacggcggagcatccc
gagcaggcgttctttcagaagaacctcgacgagggcacgccggactgggtgccgcgcgtg
agcattcagcacaaggaccacgcgaacgtgtacccgctggtgaacgagccggccgtgctg
gcctggttcgggcagatcgccgcactggagatccacgttccgcagtggcaggtcgggcct
cgcggggcgaggcgcaaccccgaccggctggtgctcgacctcgaccccggcgagggggtc
gggctgagggagtgcgctcaggtggcggcatgggcgcgcgacatcctcgccgacatgggg
ctcgaaccggtgccggtgaccagcgggagcaagggcatccatctttacgcgcggctggac
ggagcccagacctccgatcaggcgtcggcggtggcgcgcgagctcgcccgtgcgctggag
gctgaccaccgcgacgaggtgatcagcacgatgaaacgtgtcgaccgcgccggcaaggtg
ttcatcgactggagtcagaacaacgcaggcaagacgacggtggcgccgtattcgttgcgc
ggaagggagcatcccactgtcgccgccccgcgcacgtggcgcgagctcgcgtcgccgaag
ctgcgacagctcggctacgcggaggtgctcgaccgggtggagaagaagggcgacccgttg
gcggatgcctcgaccgcgtcgacgaagcagggcggtgatgcgcacggggcagagaagagt
gccgaccgcgaccgcctgaccgtgtatcgcagcaaacgggacgccgccaagacgccggag
ccggtgccggccggcacgccagccacgacgtccggccgctccttcgtgatccagaagcac
gccgcgcgccgcctgcactacgacttcaggctcgaacgcgacggcgtgctggtgagctgg
gcgttgcccaagggtgtgccggagaccacgaagcagaaccacctggcggtgcacgtcgag
gaccacccgctcgactacggcgggttcgagggagacattccgcacggggaatacggtgcg
ggccacgtggatatctgggactcgggggtctacgacctcgagaagtggcgcgagggcgag
gaggtgatcgtcaccctgcacccgtcgcacgacggcggcctcggcggcaagccggtgaag
gtggcgctgatccacaccggcgggtcgggcggccgtggggcgaaggacgagaagaactgg
ctgatccaccgcatggccgtggatcgtgtgcgcaaggactactcccccatgctcgccacg
ctcggcagccagcagcagttggagcacgacgaggcgaggtgggcgttcgagggcaagtgg
gacggcatccgtgccatcgcctatgtgcacgacggcgcggtgcggctggtgacccgaagc
ggcaatgacgtgaccgcgcagtaccccgagttgaccgggatcgccgactccgtgcgctcc
cccgtcgtgctcgacggcgagatcgtcgcgctgaacgacggacgtcccgacttcggactg
ctgcagcagcgcatgaacctgcagaacgaggccgagatctcgcgcgtcgcctcgcgggtt
ccggtgcgctactacgcgttcgacgttctcgagctcgacggacacgacatcaccggcgcg
gagtacgaggtgcgccgcgccgcgctcgaacacgtgctgacggacaggcaccgcggggtg
gcgcaggttccggatgccgtggagggtcccatcggggccgcgatggaccgcagccgtcga
gacggcctggagggcatcgtggcgaaggagctgcggtccacgtacgcggcaggcaagcgc
tccgcgtcgtggatcaaggtgaagcaccacggcacgcaggaggtcgtcatcggcgggtgg
aagccgggcgaagggcgacgcgagaacggagtcggttcgctgctgatgggcatcccgaac
ggcgacgcgctgacctacgtcggcaaggtgggcaccgggttcggcgacgccgagctcgat
gagatcgctcggcgtctgggtgccgtcgaggcgacgcggtcaccgttcgacgacgtgccc
gcgacggatgcccgtggcgtgcactgggtgacgccgacactcgtcggcgaggtggagttc
gccgagtggacgaagggcggacgcctgcggcagccgtcgtggcgcggatggcgcaccgac
aaggagccgaaggacgtggtgcgcgagagctga
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