Humibacter ginsenosidimutans: FPZ11_01910
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Entry
FPZ11_01910 CDS
T06119
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
huw
Humibacter ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
huw03019
]
FPZ11_01910
Enzymes [BR:
huw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FPZ11_01910
Messenger RNA biogenesis [BR:
huw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FPZ11_01910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
CHD5
AAA_30
KASH_CCD
IstB_IS21
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QDZ13713
UniProt:
A0A5B8M011
LinkDB
All DBs
Position
complement(391207..393636)
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AA seq
809 aa
AA seq
DB search
MTDQLSPAERFAASRSRVGHPRLEDFRREQSFDLDPFQREACASLEDGRSVLVAAPTGAG
KTVVAAFAVALAMRHPTAKVFYTTPMKALSNQKYQEFVDDYGTDAVGLLTGDTNVNAGAR
VVVMTTEVLRNMLYADSDLLADLAYVVMDEVHYLADRFRGAVWEEVIIHLPAEVRLVSLS
ATVSNAEEFGDWLQAVRGDTDVVVSESRPVPLEQHVLVRQRLVDLFESASRGAANKVNPE
LVQMARVGGRPSGSRQFGDRGRRHGRGGRPDSGRLDRPEVIRLLDDRNLLPAIAFVFSRA
GCDQAVSQVLRSGIRLTEAHEREEIRRVAEERCRTIADEDLAVLGYWEWLEGLQRGVAAH
HAGLIPAFKEVVEELFQRKLVKVVFATETLALGINMPARTVVLERLEKFNGEARVPITPG
EYTQLTGRAGRRGIDVEGHCVIQWRDGLDPQAVAALASRRSYPLNSSFRPTYNMAVNLVA
QFGRERTREILESSFAQFQADRAVVDLARTVRKQEESLAGYERAMQCHLGDFAEYAALRR
ELSDLERKGAKASSQSAAARERRAHELADVRRRMKQHPCHGCAEREQHARWAERWWRLKR
ETDALTRQIHTRTGAVATVFDRVGDVLLELGYLADRGGEIVPTQHAHVLGRIYGERDLLV
AECLRRGAWRELDVPGLAAMACAIVYEPRRDEQNPSERYLPRGAFRGALQKTEELWARLD
DVERSHRLPGSEPLATGLCVAMFEWASGRSLASVLTEADLPAGDFVRWSKQVIDLLDQLS
GVATGTLAIVARDALVAVRRGIVAYSGVA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgacggatcagctctcgccggcggaacgcttcgcggcgtcgcgaagccgggtcgggcat
ccacgcctcgaagacttccgccgtgagcagtcgttcgacctcgacccgttccagcgggag
gcgtgcgcgagcctcgaagacggccgcagcgtgctggtcgccgcgccgacgggggcaggc
aagaccgtggtcgctgcgttcgccgtggcgctcgcgatgcggcatcccaccgccaaggtc
ttctacacgacgcccatgaaggcgctgtcgaaccagaagtaccaggaattcgtcgacgac
tacggcacggatgccgtcggcctgctcaccggcgacacgaacgtgaacgccggcgcgcgc
gtggtggtcatgaccaccgaggtgctgcgcaacatgctctacgcggactccgacctgctc
gccgatctcgcgtatgtcgtgatggacgaggtgcactacctcgccgaccgattccgcggt
gcggtgtgggaggaggtcatcatccacctgcccgccgaggtgcggctggtctcactcagc
gcgacggtgtcgaacgccgaggagttcggcgactggctgcaggccgtgcggggcgacacc
gacgtggtcgtctcggagagcaggcccgtgcccctcgagcagcacgtgctggtgcgacag
cggctcgtcgacctgttcgaatcggcatcgagaggcgcggcgaacaaggtcaaccccgag
ctggtgcagatggccagggtcggtggccgcccttccggatcgcgacagttcggcgaccgc
ggcagacggcacggccgaggaggaaggcccgactccggccgactggaccggccagaggtg
atcaggttgctcgacgaccgcaacctcctgccggccatcgccttcgtgttcagcagggcg
ggatgcgatcaggcggtgtctcaggttctccgatcgggcatccggctcaccgaagcgcac
gagcgcgaggagatccgccgtgtggcggaggagcggtgccgcacgatcgccgacgaagac
ctggccgtgctcggctactgggagtggctggagggcctgcaacgcggcgtcgcagcccac
catgccggcctgatcccggcgttcaaggaggtcgtggaggagctcttccagcgcaagctc
gtcaaggtggtgttcgccaccgagaccctcgcgctcggcatcaacatgccggcccgcacc
gtggtgctggagcggctggagaagttcaacggcgaggcccgcgtgccgatcacgccgggg
gagtacacgcagctcacggggcgtgctggtcgacgcggcatcgatgtcgaggggcactgc
gtcatccagtggcgagacgggctcgatccgcaggccgtcgcagcgctggcatcccgccgc
agctacccgctcaactcgagcttccggcccacctacaacatggcggtgaacctcgtcgcc
cagttcggtcgcgagcgcaccagggagatcctcgagtcgtcgttcgcacagttccaggcc
gacagggcggtggtcgacctggcgcgcaccgtgcgcaagcaggaggaatcgctcgccggc
tacgagcgggccatgcagtgccatctcggcgacttcgccgagtatgcagccctgcgccgc
gagctcagcgatctggagcgcaagggcgccaaggcttcctcgcagagtgcggcggcgagg
gaacggcgcgcgcacgaactggcggacgtgcgcagacgcatgaaacagcatccctgccac
ggctgcgcagaacgcgagcagcacgcccgctgggcggagcgctggtggcgtctgaagcgc
gagacggatgccctcacccgtcagatccacacccgcaccggcgccgtcgccacggtcttc
gaccgcgtgggcgacgtgctcctcgaactgggctatctcgccgatcgcggcggcgagatc
gttccgacccagcacgcgcacgtgctcggccgcatctacggggagcgcgacctcctggtc
gcggaatgcctgcgtcgcggcgcgtggcgggagctcgacgtccctggactcgccgccatg
gcctgtgccatcgtctacgagccgcgcagggacgagcagaacccctctgagcgctatctg
ccgcgtggcgcgttccgcggcgcgctgcagaagacggaggagctctgggcgcgtctcgac
gatgtcgaacgatcccaccgcctccccggcagcgagccgctggccaccgggttgtgcgtg
gcgatgttcgaatgggcatccggacgttcgctcgcctccgtgctcaccgaggccgacctg
ccggccggtgacttcgtgcgctggtcgaagcaggtcatcgacctcctcgaccagctcagc
ggcgtcgcgaccggcacgctggccatcgtcgcacgcgatgcgctcgtcgccgtgcgccgt
ggcatcgtcgcctactccggagtcgcctga
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