Humibacter ginsenosidimutans: FPZ11_06460
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Entry
FPZ11_06460 CDS
T06119
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPZ11_06460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
huw03400
]
FPZ11_06460 (mfd)
Enzymes [BR:
huw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPZ11_06460 (mfd)
DNA repair and recombination proteins [BR:
huw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FPZ11_06460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDZ14448
UniProt:
A0A5B8M0V2
LinkDB
All DBs
Position
complement(1356810..1360451)
Genome browser
AA seq
1213 aa
AA seq
DB search
MILEGLTGALSRAQTFADALAYANRDADFSVTTGLRVPLAAALLGTRPADKQVLLVVTAT
GRESEALRGALASVAPSAEIVEFPAWETLPHERLSPSPEIVGKRLAALRRLRTWSKDAGH
PLVVVASVRAALQPLATGLDLIEPVLLAEGSRGHDLSGIAERLVALAYARVDMVTRRGEF
AVRGGILDVFPPTAEHPVRVDFFGDEVEQIRAFSVADQRSLPHDVPQVELAPARELLLTD
AVRQRAAEMAHEFPGLEQLLTKVAEGIPVEGMESLAPALVDDLVPLTDYLPDGVAVAVMS
PERVAARALSLSETNREFLEAAWSAATVGAAAPIDLASGDFLSLRQLRDAAQLSRPGQKA
PDHPWWTFSSFDTGGAEPVVPIGEQSIEDLVESAGDYVRVDASAVPSFAGNVDGAIEHVG
QRLADGWRVAIVAAGHGLVERAVDVMSERGLAARQVDAYPSDAEAGVAYVLPASVEQGFE
LPEAKLALIGETEFYGRTIGYDSRQVKKLGVRRKNVVDPLQLRAGDFVVHETHGIGKFVE
LVQREVSSGGRNAVKSKREYLVLEYAPSKRGYPGDKLYVPTDQLDLLSRYVGGEAPQLSK
MGGSDWAQAKGRARKAVRDIAVELVKLYSARMASKGHAFGADTPWQHELEEAFPFVETPD
QLQTIDEVKADMERPIPMDRLISGDVGFGKTEIAVRAAFKAVQDGKQVLLLVPTTLLVRQ
HFETFQERFAGFPVHLRQLSRFQTDREAKEVMDGLADGTVDVVIGTHRLLSKNLSMKDLG
LVIIDEEQRFGVEHKDALKKLKTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEDRH
PILTFVGAHSDRQVAAAIRRELLREGQVFYVHNRVSSIQRVASHLAELVPEARIAVAHGQ
MNEHVLEQMVVDFWERKFDVLVCTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVG
RGRERAYAYFLWDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQS
GHIAGVGFDLYLRMIGEAVGTFRGEVAEGQTELRLELPVDAHIPEDYVDSERLRLEAYQK
LSAASGPKAKQESIDLVLEELTDRYGEPPEAVSNLIAVSRLRRRAQQAGLSDVVAMGSNL
RIAPAELPDSLQVRLQRMYPKSRIVSAQKVVLVPLPVTDGESLPDAELIAWVRSLLDAIF
PLPEPEAVAPLVE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctcgagggcttgaccggggcgctttcgcgcgcccagacattcgccgacgccctc
gcctacgcgaatcgcgacgcggacttctcggtgaccaccgggctccgcgtgccactcgcg
gcggcgttgctcggcacccgtccggccgacaagcaggtgctgctcgtcgtgaccgccacg
ggacgcgagtcggaggcgctgcgcggtgcgctggcatccgtcgcgccgagcgccgagatc
gtcgagttccccgcctgggagacgctgccccacgagcggctgagcccgagcccggagatc
gtcggcaagaggcttgccgcgttgcgccggctgcgcacctggtcgaaggatgccggccat
ccgctggtcgtcgtcgcgtccgttcgcgccgcgctgcagccgctcgccacgggtctcgac
ctgatcgagcccgtgctgctggccgagggcagccgcggacacgatctctccgggatcgcc
gagcgcctggtcgctctcgcctacgcccgtgtggacatggtgaccaggcgcggcgagttc
gcggtgcgcggcggcatcctcgacgtctttccgccgacggccgagcaccccgtgcgtgtc
gacttcttcggcgacgaggtggagcagatccgcgccttctcggtcgccgatcagcgctcg
ctgccgcacgacgtgccgcaggtcgagctggcgccggcgcgcgagctgctgctcaccgac
gccgtgaggcagcgcgctgcggagatggcccacgagttccccgggctggagcagctgctg
acgaaggtggcggagggcatccccgtcgagggcatggagtcgctggcgcccgcgctcgtc
gacgacctcgtgccgctgaccgattacctgcccgacggcgtggccgtggccgtgatgtcg
cctgagcgcgtcgcggcgcgtgcgctcagcctttcggagacgaaccgggagttcctcgag
gcagcatggagcgccgcgacggtgggtgcggccgcgcccatcgatctcgcgtcgggcgac
ttcctctctctgcgccagctgcgcgacgccgcacagctgagcaggccggggcagaaggcg
cccgaccacccgtggtggacgttctcgagcttcgacaccgggggagcggagcccgtggtg
ccgatcggcgagcagtcgatcgaagacctggtcgagtcggcgggcgattacgtgcgcgtc
gacgcctcggccgtgccgagcttcgcgggcaacgtcgacggagccatcgagcacgtcggg
cagcgtctggcggacggctggcgggtcgcgatcgtcgcggcgggacacggactcgtggag
cgagcggtcgacgtgatgtccgagcgcggcctcgcggccaggcaggtggatgcctacccg
agcgacgccgaggcgggtgtcgcgtacgtgctgccggcgtccgtggagcaaggcttcgag
ctgccggaggcgaagctcgcgctgatcggcgagaccgagttctacgggcgcaccatcggc
tacgactcgcgccaggtgaagaagctgggcgtgcggcgcaagaacgtggtcgacccgctg
cagctgcgcgccggcgatttcgtggtgcacgagacgcacggcatcggcaagttcgtcgag
ctggtgcagcgcgaggtgtcgagcggcggtcgcaacgcagtgaagtccaagcgcgagtac
ctcgtgctggagtacgcgccgtcgaagcgcggctatccgggcgacaagctctacgtgccg
accgaccagctcgacctgctcagccgctacgtcggcggcgaggcaccgcagctgtcgaag
atgggcggcagcgactgggcgcaggccaagggtcgtgcgcgcaaggccgttcgggacatc
gccgtcgagctggtgaagctgtactcggcacgtatggcctccaagggccacgcgttcggg
gccgacaccccgtggcagcacgagctcgaggaagcgttcccgttcgtcgagacgcccgat
cagctgcagaccatcgacgaggtgaaggccgacatggaacggcccatcccgatggaccgg
ctcatctcgggcgacgtcgggttcggcaagaccgagatcgccgtgcgggccgcgttcaag
gcggtgcaggacggcaagcaggtgctgctgctggtgccgacgactctgctggtcagacag
catttcgagacgttccaggaacggttcgcgggcttccccgttcacctgcgccagctcagc
aggttccagaccgaccgcgaggcgaaggaggtcatggacggcctcgccgacggcaccgtc
gacgtcgtgatcggcacgcaccgactgctgtccaagaacctctccatgaaggatctcggg
ctcgtcatcatcgacgaggagcagcgtttcggggtggagcacaaggacgccctcaagaag
ctgaagacgaacgtcgacgtgctcgcgatgagcgcgacgcccatcccgcgcacgctcgag
atggcggtgacgggcatccgcgagatgtcgacgctggcgacgccgccggaagacaggcat
ccgatcctcacgttcgtcggggcgcactccgacaggcaggtggcggcggcaatcaggcgc
gaactgctgcgcgagggacaggtgttctacgtgcacaaccgggtgtcgagcatccagcgg
gtcgcatcgcaccttgcggagctcgtgcccgaggcgcgtatcgcggtcgcgcacggtcag
atgaacgagcatgtgctcgagcagatggtcgtggacttctgggaacgcaagttcgacgtg
ctggtgtgcacgacgatcatcgagaccgggctcgacatcgccaacgcgaacacgatcatc
atcgaccgcgccgacaaatacggcctgtcgcagctgcaccagctgcgcgggcgcgtcggc
cgtggtcgtgagcgcgcctacgcctatttcctctgggatgccgacaagccgctctccgag
accgcccacgaccggctgtccaccatcgcggccaacaacgagctcggcagcggcatgcag
gtggcgctcaaagacctcgagatccgcggcgcgggcaacctgctcggtggcgagcagtcc
ggccacatcgccggcgtcggcttcgacctctacctgcgcatgatcggcgaggcggtcggc
accttccgcggcgaggtcgcagagggacagaccgagctgcggctcgagctgccggtggat
gctcacatccccgaggactacgtcgacagcgagcggctgcggctcgaggcgtatcagaag
ctctcggcggcatccggtccgaaggcgaagcaggagtcgatcgacctcgtgctcgaggag
ctcaccgaccgctacggcgagccgccagaggcggtgtccaatctgatcgcggtctcgcgg
ctgcgcaggcgtgcccagcaggccggactctcggacgtggtggccatgggctcgaatctc
cgcatcgcgccggccgagctgcctgactcgttgcaggtgcggttgcagcgcatgtacccg
aagtcgcgcatcgtctccgcgcagaaggtggtgctcgttcccctgccggtcaccgatggg
gagtcgctgcccgacgcagagctgatcgcgtgggtgcgttcgctgctcgacgcgatcttc
ccgctgccggagcccgaggcggtcgccccgctggtcgagtaa
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