Humibacter ginsenosidimutans: FPZ11_07125
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Entry
FPZ11_07125 CDS
T06119
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
huw
Humibacter ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
huw03019
]
FPZ11_07125 (hrpA)
Enzymes [BR:
huw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FPZ11_07125 (hrpA)
Messenger RNA biogenesis [BR:
huw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FPZ11_07125 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_30
AAA_22
HA2_N
AAA_23
nSTAND3
PhoH
T2SSE
ResIII
NACHT
TsaE
AAA_16
SLFN-g3_helicase
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
QDZ14558
UniProt:
A0A5B8M167
LinkDB
All DBs
Position
1501081..1504995
Genome browser
AA seq
1304 aa
AA seq
DB search
MSSVPPAVESAARTGIPVIHFPPELPVSERREEIARAIEQNQVVIVAGETGSGKTTQLPK
ICLALGRESIGHTQPRRIAARAIAERVAEELGDEVGGLVGYKVRFTDEVSKATRIKVMTD
GILLNEIHRDRDLTAYDTIIIDEAHERSLTIDFLLGYLKRLLPRRPDLKVIVTSATIDPE
SFAKHFADAEGDPAPVVEVSGRTYPVEVRYRPLVADDEGDDDVDAAPAVDRDYLTGITDA
LDELGREKPGDVLVFLSGETEIRDAEDAVRGHLTRRGEAASTQVLPLYGRLSSADQHRVF
GPVPAGIRRRIVLSTNVAETSLTVPGIRYVIDAGTARISRYSTRAKVQRLPIEAISQASA
KQRSGRSGRTSDGIAIRLYSEDDFEKRPEFTEPEILRTNLAAVILQMISLGLGDIDAFPF
LTPPDSRGVKDGLDLLAELGAVHDGRLTKTGRTLARLPIDPRFGRMLVESGRQDVVREVM
VIVSGLTIQDPRERPLEKRARADQQHARFTDQTSDFLTLLNLWNHLEQKQKELGSSAFRR
LCKAEYLNYLRIREWQDLYRQLRRTAKPLGLAPGDAKVDGDAIHKSLLSGLLSHIGLRDA
AKKDYLGARNTRFLIFPGSVLAAKREGRAQPQAVMSAELVETSRLFARMNAAIDPAWAEP
LAGDLVRRSYSEPHWEKRQGAAVVFEKVTLFGVPIVPKRRAQLSRIDAPLARELFIRHAL
VAGEWPSDTRDHAFDFQRANAKLRVELEKVEERTRRRDILLDDEAMVSFFEERIPAEVTD
TRSFESWWRQERRTKGRLLTMRREDLVDDVEEAIVDEDAFPPVWRQGDQRLALSYRFVPG
DEDDGVTVQVPLALLPRLSPIGFDAQVPGLRVELITAFIRTLPKALRRSVVPAADWAARI
AAELPAGIGSGAGAETGASGAGASGPRAGELEPFTGILSRTIRRLTSTPVDPSDFDVERV
PPHLRMTFRVVDERSKVVATGKDLLELQRRLAPKVRESVAKASVRRRDPIERTGLTTWDF
DELPRFVDTEQGGRGTGMPRSVIRGYPTLVPEKDGVAIRVVGTQQEQERSLPDGVRALLL
NGIPSPTAYVQQHLTSAEKLALAASPYPSTTALFDDCLAAVVGSVLFEAAPGGLVFTRAE
FEAIRDSVSAGVMDALFTTVSLVARVLTEQRAAEKTISGTSSMALLGALTDAKAQLAGLV
FPGFVSRTGLAQLRQLPRYLQALTWRIERLPDNPGRDRVWMTEVQTATARFTDAGGIIPL
PVHAAPKLVHARWMLEELRVSLFAQQLGTAETVSLQRIQKVLNP
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgtgccgcccgcagtcgagtccgccgctcgcacaggcatccccgtcatccac
ttcccgcccgagctgcccgtcagcgagcgccgggaggagatcgcgcgcgccatcgagcag
aaccaggtcgtgatcgtcgccggcgagacggggtcgggcaagaccacgcagctgccgaag
atctgtctcgcgctggggcgcgagtccatcggccacacgcagccccgccgcatcgcggcc
cgcgcgatcgccgagcgggtggctgaagagttgggcgacgaggtcggcgggctcgtcggc
tacaaggtgcgcttcaccgacgaggtgtcgaaggcgacgcgcatcaaggtgatgaccgac
ggaatcctactgaacgagatccaccgcgaccgcgacctgaccgcttacgacacgatcatc
atcgacgaggcgcacgagcgcagcctcaccatcgacttcctgctcggctacctgaagcgg
ctgctcccccgacgccccgatctcaaggtcatcgtcaccagcgcgaccatcgacccggag
agcttcgcgaagcacttcgccgatgccgagggcgaccccgcgccggtcgtcgaggtctcc
ggccgcacctaccccgtcgaggtgcgctaccgccctctcgtcgccgacgacgagggcgac
gacgacgtggatgccgcgccggccgtcgaccgcgactacctcaccggcatcaccgatgcg
ctcgacgagctcggccgcgagaagccaggcgacgtgctggtgttcctctccggcgagacc
gagatccgggatgccgaagacgccgtgcgcgggcacctcacgcgccgcggcgaggcggca
tccacccaggtgctgccgttgtacggcaggctgtcgtccgccgaccagcaccgcgtcttc
gggccggtgcctgcgggcatccgccgccgcatcgtgctctccacgaacgtggcggagacc
agcctgaccgtgccgggcatcaggtacgtgatcgacgcgggcaccgcgcgcatctcgcgc
tactcgacgcgcgcgaaggtgcagcgcctgccgatcgaggccatctcgcaggcctccgcg
aagcagcgctcaggccgctccggccgcacgagcgacggcatcgcgatccggctctactcg
gaggacgacttcgagaagcggccggagttcacggagccggagatcctgcgcaccaacctg
gcggcggtcatcctgcagatgatctcgctcgggctgggcgacatcgacgcgttcccgttc
ctcacgcctcccgactcgcgcggcgtgaaggacggtctcgatctgctcgccgagctgggc
gccgtgcacgacgggcggctgacgaagaccggccggacgctcgccaggctgccgatcgat
ccgcgattcggacgcatgctcgtcgagtccggtcgtcaggacgtcgtgcgcgaggtgatg
gtgatcgtgtccgggctgacgatccaagacccgcgcgagcgtccgctcgagaagcgcgcg
cgggccgaccagcagcacgccaggttcaccgatcagaccagcgacttcctcaccctgctc
aacctctggaaccacctggagcagaagcagaaggagctcggatccagcgcgttccgtcgc
ctctgcaaggcggaatacctcaactatctgcgcatccgcgagtggcaagacctctaccgc
cagctgcgccgcaccgccaaaccactcggtctcgcaccaggcgacgcgaaggtcgacggg
gatgccatccacaagtccctgctgtctggcctgctctcgcacatcggcctgcgcgacgcc
gcgaagaaggactacctcggcgcccgcaacacccgttttctgatcttcccgggctcggtc
ctcgctgccaagagagaaggcagggcacagccacaggccgtgatgagtgcggagctcgtg
gagaccagtcgcctgttcgcgcgcatgaacgccgcgatcgatccggcgtgggccgagccg
ctcgccggcgacctggtgcgccgcagctacagcgagccgcactgggagaagcgccagggc
gctgccgtcgtgttcgagaaggtcacgctgttcggcgtgccgatcgtgccgaagcggcga
gcgcagctcagccgcatcgacgcgcctctggcccgcgagctcttcatcagacacgctctc
gtcgccggcgaatggccgagcgacacccgtgaccacgccttcgacttccagcgcgccaac
gcgaagctgcgcgtcgagctcgagaaggtggaggaacgcacgaggcgacgggacatcctg
ctggatgacgaggcgatggtctcgttcttcgaggagcgtattccggccgaggtcaccgac
acccgctcgttcgagtcgtggtggcggcaggagcggcgcacgaagggccgcctgctcacg
atgcgccgcgaagacctcgtcgacgacgtcgaggaagcgatcgtcgacgaggacgccttt
cctccggtctggcgccagggcgaccagcggctcgcgctgagctaccggttcgtgcctggc
gatgaggacgacggcgtgaccgtgcaggttccactcgcgctgctgccccggctgagtccg
atcggcttcgacgcacaggttcccgggctgcgcgtcgagctgatcacggcattcatccgc
acgctgccgaaggcgctgcgccggtccgtggtgcccgccgccgactgggcggcccgcatc
gcggcggagctgccggcgggcatcggctccggcgcgggtgcagagaccggggcgagcggg
gccggcgcctcaggcccgagggccggcgagctcgagccgttcacgggcatcctgtcgcgc
accatccgccggctcacgagcaccccggtcgacccgagcgatttcgacgtggagcgcgtg
ccgccgcacctgcgcatgacgttccgcgtggtcgatgagcggtccaaggtggtcgcaacc
ggcaaggatctgctcgagctgcagcgcaggctcgcccccaaggttcgggagtcggtggcg
aaggcctccgtgcgccgtcgcgacccgatcgagcgcaccgggctcaccacctgggacttc
gacgagttgccgcgcttcgtcgacaccgagcagggcggaagaggcaccgggatgccgcgc
agcgtcatccgcggctatcccaccctggtgccggagaaagacggcgtcgcgatcagggtc
gtcggaacgcagcaggagcaggagcgctcgctgcccgacggcgtgcgcgcgctgctgctg
aacggcatcccgtcgccgacggcgtacgtgcagcagcacctcacttcagcagagaagctg
gcgctggccgcgagcccctatccgtcgacgacggcgctcttcgacgactgcctcgccgca
gtggtcggctcggtgctgttcgaggccgcgccgggcggtctggtgttcacgcgggccgag
ttcgaggcgattcgcgacagcgtctctgccggggtgatggatgccctgttcaccacagtc
tcgctcgtcgcccgcgtgctcaccgagcagcgtgccgccgagaagaccatctcgggcacg
tcgtcgatggccctgctcggcgcgctcaccgatgcgaaggcgcagctggccggactcgtg
ttccccggtttcgtctcgcgcacggggctggcgcagctgcggcagctgccgcgctatctg
caggcgctgacgtggcgcatcgagcggctgcccgacaatccggggcgcgaccgcgtgtgg
atgaccgaggtgcagaccgcgacggcacgcttcacggatgccggcggcatcatcccgctc
cccgtgcacgccgcaccgaagctggtgcacgccaggtggatgctcgaggagctgcgggtg
agcctcttcgcgcagcagctcggcaccgctgagacggtgtcgttgcagcgcatccagaag
gtgctgaacccgtag
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