Homalodisca vitripennis (glassy-winged sharpshooter): 124354811
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Entry
124354811 CDS
T09217
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124354811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvi03400
]
124354811
Enzymes [BR:
hvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124354811
DNA repair and recombination proteins [BR:
hvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124354811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
Rnk_N
mRNA_cap_enzyme
PGA_cap
Motif
Other DBs
NCBI-GeneID:
124354811
NCBI-ProteinID:
XP_046661491
EnsemblRapid:
LOC124354811
LinkDB
All DBs
Position
2:complement(138875399..138937345)
Genome browser
AA seq
892 aa
AA seq
DB search
MASTSRQNKELMFSEFCAVCDKISTARREKKADILKRFISDYHANNETSFYRVLRLLLPK
LDRERAAYGIKEFVLANIYVRILCLHPESADALKLKNFRAPKNAGNHAGDFGEVAYWVLK
SRCSEGGELTVDDVQRHLDTVALKHAERLPREKDKELEVMLRRMSAQEQKWLIRILLKDM
RLGLGHTRILSVYHPDANDLWVLNNSLQQVCEKLRDPTRRLHEIEITLFNPFCPMLAERC
NVQDIDKHLQRRPGPRYIETKLDGERSQFHYNKGEFKFFSRNAFDFTDSFGSSSTSGSLT
PYLAKQLKPNIKNFILDGEMMPWNTKFKCFGTKGMNLDVKSLRVGNVHQPCFCVFDILYY
NDSVLTNKPLSERLETLKKVFTPQEGIIMHVPRQTVNCSEEVLAALNTAIDNFDEGIIVK
EPNSIYKPKSRKDDWIKIKPEYTPGAMVELDLLIIGGYYGEGRRRGLISHFLLGLAQPAP
AGEEPVVFESVTRVGSGCTMEELATLSRQLEPHWKRCQSSNPPTGLLWTREKPELWIKPQ
NSVILQVKASEVVQSDFYQTGYTLRFPRIEKVRYDKPWKDCLTTDEFTKLRLAASGSLVG
SYITAQPPRAKKRRAAQPQPSVSAQFRATHLDHVKAHSQLFTGKEICILTGLHEVSKQDL
ERQVKENGGKIVLNPGKTTYCVIVGKENIRVTNVCKAGTYNVVRAQWLLHSLDAGQLLEW
TPADVVSATPETKDQLEQHYDQYGDSFTQPATLHSIQHVLPQVEKREMSVKQMKKLDQLL
FHGCSPFSVFRGCFTYFDCYEKVGEHSTLVDTPLNSVVFDFKFQSGQVCPTVNDQTTHIV
VHSSDLDRLEELISRAEQQSSQIHIVHHYWLLDCIESKAQLSEEKYLLHQWE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaccagtagacagaacaaggagctcatgttcagtgagttttgtgctgtgtgt
gacaaaatcagcacagctcgcagggagaagaaggctgacattctgaagcgattcatctcg
gattaccatgcaaataatgaaaccagtttctatcgagtgttgcgactgctgctgccgaaa
cttgaccgagaacgagcagcgtatggcattaaagaatttgttcttgccaatatctacgtc
cgcatcctctgccttcatcctgaaagtgctgatgcactgaaattgaaaaactttcgagca
ccaaaaaatgcaggaaaccatgctggagactttggtgaagtggcatactgggtattgaag
agccgctgctcagaaggtggagagcttacagtggatgatgttcagcgccatcttgatact
gtagctcttaaacatgcagagagacttccccgagagaaagataaggagctggaggtgatg
ttacggcgcatgtcggcccaagagcagaaatggttgatccggattctgttgaaggacatg
aggctggggttaggacacacccgaattctgtccgtgtaccatccagacgccaatgatctc
tgggtcctcaacaacagcttacaacaggtatgtgagaagctgagagatcctactcggaga
cttcatgagatagagataactctgttcaatccattctgtccaatgttggcggagcgctgc
aacgttcaggacattgacaaacacttgcaacggcgaccaggacctcgttacattgagacc
aaacttgacggagagcgtagtcaattccattacaacaagggggaatttaaattcttttcc
aggaatgcttttgattttacggattcatttggaagtagcagcacttctgggtctcttacc
ccatacctggccaagcagctgaaacctaacatcaaaaatttcattttggatggagaaatg
atgccatggaataccaagttcaaatgctttggcactaaagggatgaatctggatgtgaag
agtcttcgagtgggcaatgtgcaccagccgtgtttctgtgtctttgatattctctactat
aatgactctgtgttaaccaacaagcctctgagtgaaagactggagactctaaagaaagtt
ttcacacctcaggaaggcatcattatgcatgtgcctcgccaaactgtcaattgtagtgaa
gaggttttggcagccctgaacactgccattgacaactttgatgagggcatcattgtcaaa
gagccaaactccatttacaagcctaagtcccgcaaagatgactggatcaaaatcaaacct
gagtacacaccaggagccatggtagaactggatctactcatcataggtggatactatgga
gagggcagaagacgaggtcttataagccattttctgctaggtttagcccaacctgctcca
gccggtgaagagccggtagtgtttgagtcagtgacaagagtaggctcgggttgcacaatg
gaggaattggcaacactcagcagacagttggaaccacactggaagcgctgccaatcaagc
aaccctcccaccggactgctttggaccagggagaagccagaactctggattaaaccacag
aactctgtcatcttgcaggtgaaagcatccgaggttgttcaaagtgacttctaccaaact
ggttacactctacgcttccctcgtatagagaaagtcagatatgacaagccttggaaagac
tgccttactacagatgaattcaccaaattgagactggcagctagtgggagcttggtggga
tcatacatcacagcgcagccacctcgtgccaagaaacgtcgtgcagcacagcctcagcct
agtgtatcagcacagttccgtgccacccacctggaccatgtcaaagctcattcgcaactg
ttcactgggaaggaaatctgtatactcaccgggctacatgaggtatccaagcaagaccta
gagcgccaggtgaaggagaacggaggcaaaattgtactcaacccaggtaagacaacgtac
tgtgtgatagtgggcaaggagaacatacgggtcactaacgtgtgcaaggccggtacttac
aatgtggtgcgtgcccagtggctacttcacagcctggatgccggacagctactggagtgg
acgccagcagatgtggtcagtgctacaccggaaactaaagaccagcttgagcagcattat
gaccagtatggcgatagcttcacacagccagcaactcttcactccattcagcacgtgttg
ccgcaagtggaaaagagggaaatgtcagttaaacagatgaagaaattagatcaactgctt
tttcatggttgcagtcctttttctgttttccgaggctgtttcacctattttgactgttac
gagaaagtgggtgaacactcaacactagtagacactccattgaactctgttgtgtttgac
ttcaagttccagagtggtcaagtgtgtcctacggttaacgaccagactacccacatagtg
gtacactcgagtgatttagaccggctagaagagttgatatctcgagcagaacagcaatcc
agccaaattcacattgtccatcactactggcttctagactgtatcgaatctaaggcacag
ctttcagaggagaaatacctccttcatcagtgggaataa
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