Hwangdonia sp. SCSIO 19198: RNZ46_01865
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Entry
RNZ46_01865 CDS
T09455
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hws
Hwangdonia sp. SCSIO 19198
Pathway
hws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RNZ46_01865 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hws03019
]
RNZ46_01865 (rny)
Messenger RNA biogenesis [BR:
hws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RNZ46_01865 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
YtxH
KhpA-B_KH
DUF4407
KH_2
HAUS6_N
INCA1
Motif
Other DBs
NCBI-ProteinID:
WOD44019
UniProt:
A0AA97EM34
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All DBs
Position
complement(428748..430325)
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AA seq
525 aa
AA seq
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MDNNSIILTVGGVLLGLIIGFVIAKMLEKNKASKLIRDAKRSASNILKEANTEGESIKKD
KILQAKEKFIELKSEHEKVILSRDKKMAEAEKRTRDKESQVSNELAKNKKLNATLEAKQK
DYSYRLDVLEKKQEALDKLHKSQVQQLEVISSLSAEEAKEQLVESLKGEAKNDAMSYIQG
ALEEAKLTAEQDAKKIIINTIQRIGTEEAVDNCVSVFNIESDDVKGRIIGREGRNIRAIE
AATGVEIIVDDTPEAIILSCFDSVRREIARLSLHKLVTDGRIHPARIEEVVRKTQKQIEQ
EIIEVGKRTVIDLGIHNLHPELIKMVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLN
PKLAKRAGLLHDIGKVPDAEADMETPHAILGMQWAEKYNEKDDVCNAIGAHHDEIEMKSL
LAPIVQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFQGVKKAYAIQAGRELRVIVE
SERVDDQKAADLSFSISQKVQTDMTYPGQVKVTVIRETRAVNIAK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggataataattcaataatattaacagtaggaggtgtgctattagggcttataataggg
tttgtaatagctaaaatgcttgagaaaaacaaagcttctaagttaatacgagatgctaaa
agaagcgcatccaacatattaaaagaggccaataccgaaggtgaatctattaaaaaagac
aaaatacttcaagccaaggaaaaatttatagaacttaagtctgaacacgagaaagttatt
ttgtctcgtgataagaagatggccgaagccgaaaagcgcacccgtgataaagaatctcaa
gtatcaaacgaacttgcaaaaaacaaaaagcttaatgccacgctggaagccaaacaaaaa
gactacagctacagactcgatgttttggaaaagaaacaggaagccttagataaacttcac
aaaagccaagtgcagcagcttgaagttatttctagtttgtctgccgaagaggcgaaagaa
caattggttgaatcgttaaaaggagaagctaaaaacgatgccatgtcgtacattcaaggg
gcattggaagaggctaaattaacggccgaacaagacgctaagaaaataattataaacacg
atacagcgtataggaaccgaggaagccgttgataactgtgtgtctgttttcaatattgaa
tctgatgacgtaaaaggacgtattataggtcgagagggtcgaaacattcgtgccattgag
gcagctacaggtgtagaaattattgttgatgatactcccgaagccattattttatcgtgt
ttcgattcggttcgaagagaaattgcccgtttatcgctacataaattagtgaccgatggt
agaattcacccggcaagaattgaagaggttgtaaggaaaacacaaaaacaaattgaacag
gagattattgaagttggtaagcgtaccgttatagatttaggaattcataatttacacccg
gaacttataaagatggttggaagaatgaaataccgttcgtcttatggacaaaatctttta
caacactcacgcgaagttgctaaactttgtggcgtaatggctgccgaattaggtttgaat
cctaaactggcaaaacgtgctggattattgcacgatataggaaaagtgccagatgccgaa
gcagatatggaaacaccacacgctatacttgggatgcaatgggctgaaaagtataatgaa
aaagatgatgtttgcaatgccattggagcgcaccacgatgaaattgaaatgaaatcgttg
ctcgcgccaattgtacaggtttgtgatgccatttcgggagcacgccctggtgctcgccga
caagtattggatagttatattcaacgtttaaaagatttagaggatatagcttttggattc
caaggcgttaaaaaagcttatgccattcaagcaggaagagagttacgggttattgttgaa
agtgaaagagtagacgatcaaaaagcggctgatttgtcatttagtatttcccaaaaagta
caaaccgatatgacctatcccggtcaagttaaggttaccgtaattagagaaacaagggcg
gtaaacattgcaaaataa
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