Hwangdonia sp. SCSIO 19198: RNZ46_05960
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Entry
RNZ46_05960 CDS
T09455
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hws
Hwangdonia sp. SCSIO 19198
Pathway
hws03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RNZ46_05960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hws03400
]
RNZ46_05960 (mfd)
Enzymes [BR:
hws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RNZ46_05960 (mfd)
DNA repair and recombination proteins [BR:
hws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RNZ46_05960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WOD44807
UniProt:
A0AA97HRN3
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All DBs
Position
complement(1386979..1390419)
Genome browser
AA seq
1146 aa
AA seq
DB search
MSKSILSQTYSQTLHMQNLQGAIAQTQSKIHLKGLVGSSLSFVISSVFKQANKPFLLVFN
DKEEAAHYLNDLEQLCNPKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSQKKPAI
IVTYPDALFEKVVTRKELERNTLKVSVDDKISIDFVNEVLFEYQFKRVDFVTEPGEFSVR
GGIVDVFSFSHDQPYRIEFFGDEVDSIRTFDVETQLSVEQIKKVNIIPNVANKLIEEKRQ
SFLKYIAQKTVVCFKNADLFFSRIDDFYEKAEDAFKALNSELKHAEPQMLFANSAVLKKQ
LLDFSIVEFGTTSVFNNNVIASETSQSVSKEEITTLRLRSVQAEQAPRNDVNEITFNTTP
QPAFNKQFNLLIEDLNTNNKKGYTNYIACISEQQAKRFHDIFDDSNLDVKQYQTIILSLY
QGFIDHDNKMVCYTDHQIFERYHKFHLKNGYAKKQAITLKELTSLGIGDYVTHIDHGVGR
FGGLQKIDVEGKKQEAIKLVYGERDVLYLSIHSLHKITKFNGKDGKPPKIYKLGSKAWKT
LKQKTKARVKHVAFNLIKLYAKRKTQKGYQYKPDSYLQHELEASFIYEDTPDQITATADI
KADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHSRTFKQR
LKDFPVTVDYVNRFRTAKEKRETLEGLEKGHVDIIIGTHQLVNKNVKFKDLGLLIVDEEQ
KFGVSVKEKLKTLKDNVDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESHVIR
FNEETIRDAVSYEIQRGGQIFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQMDGKKLEQ
LMLAFMDGEFDILVSTTIVESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFC
YFITPEYSAMTEDARKRITALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGF
DTYQKILNEAIEELKENEFKDLYNDDKTDKVYVKEVTIDTDFELLFPDDYVNNITERLNL
YTQLNNLNTEAELQKFETELIDRFGELPTQVTDLLNSVQLKWIATKLGFEKIIMKKGKFV
GYFVNDQQSPYYQSDNFTKVLKFVQSNPGICKMKEKQTRNGLRLLLTFESVKSVKQALAI
LKPIMA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaatccatcctctcgcaaacctattcacagactttgcacatgcaaaatctgcaa
ggtgctattgcccaaactcaaagtaaaatacatttaaaagggctcgttggctcctctttg
tcctttgtaatttccagcgttttcaagcaggccaacaagccatttttattagtgtttaac
gacaaggaagaggccgcacattacctaaacgatttagagcaattgtgcaaccccaaagac
gtgttgttttacccgggcagttaccgaaggccttaccaaatagaggaaaccgataatgct
aacgtgctgcttcgtgccgaggttttaaaccgcattaattcgcaaaagaaaccggccata
attgtaacctatcccgatgcactattcgagaaagtggtcactagaaaagagttggaacgc
aacactttaaaagtgtcggtagacgataaaatatccatcgattttgtaaacgaagtattg
tttgaatatcaatttaaacgcgtcgattttgtaaccgaacccggagagttttcggtgcgc
ggtggtattgtggatgtgttttcgttttcgcatgaccaaccctatcgtatcgagtttttt
ggtgatgaggtagacagtatcagaacttttgatgtggaaacccaactctcggtagaacag
attaaaaaagtcaatattatccctaatgttgccaataagcttattgaggaaaagcgccaa
agtttcttaaaatacatcgctcaaaaaacggtggtttgttttaaaaatgccgacttgttt
ttttcaagaatagacgatttttatgaaaaggctgaagacgcttttaaggcactcaattca
gaattaaaacacgccgaaccccaaatgctgtttgctaattcggccgtattaaaaaagcaa
ttattggatttttctattgttgagtttggaacaacatcggtttttaataataacgtcatt
gcgagtgaaacgtcgcaatctgtttcaaaggaagagattaccacacttcgactgcgctca
gtgcaggctgaacaagctcctcgtaatgatgtaaacgaaatcaccttcaacaccacgcca
caacccgcatttaataaacaattcaatcttttaatagaagacttaaatactaacaacaaa
aaaggttataccaattatattgcctgtataagcgagcagcaagccaaacgttttcatgat
atttttgatgattcaaatctcgacgtcaagcaatatcaaaccatcattttatcattatat
caaggttttatcgatcacgataacaaaatggtgtgttataccgatcatcaaatttttgag
cgctatcataaatttcaccttaaaaatggttacgctaaaaagcaggccattaccctaaaa
gagcttactagtttaggtattggtgattatgtaacgcatatcgaccatggtgttgggcgt
tttggcggccttcaaaaaatagatgtcgagggtaaaaaacaagaagctataaaattggtt
tacggtgaacgcgatgtactgtatttaagcattcattcgttacataaaatcaccaagttt
aacggtaaagatggcaaaccaccaaagatttataaactaggcagtaaagcttggaaaacc
ttaaagcaaaaaaccaaagcgcgcgtaaaacacgttgcctttaatttaataaaactttac
gctaaacgaaaaacacaaaagggctatcagtacaagccagacagctatttgcaacacgaa
ttggaagcctcttttatttatgaggatacaccagaccaaattacggcaactgccgatatt
aaagccgatatggaaagcgaacgccctatggatagattggtgtgtggcgatgttggtttt
ggtaaaacggaagtggccattcgcgctgcttttaaagccgttgataacggaaaacaagtg
gctgttttggtaccaactaccattttggcataccagcactccagaacgtttaagcagcgt
ttaaaggactttccagttaccgtagattacgtaaaccgctttagaaccgccaaagaaaaa
cgagaaactttggaaggtctggaaaaaggacatgttgatattattatcggcacgcatcag
ctcgttaataaaaacgttaagtttaaagatttgggattgttgattgttgacgaagagcag
aaatttggtgtatccgtaaaggaaaaattaaaaaccctaaaagataatgtagatgtgcta
acgctaaccgcaacaccaattccgcgtaccttgcaatttagtttaatggcggctcgcgat
ttatcggttatcacaacaccgccaccaaatcgttaccccattgaaagtcatgttatccga
tttaacgaagaaaccattcgcgatgcggtgagttatgagattcaaaggggcgggcaaata
ttttttattcacaatcgcatagaaaatattaaagaagtcgccggtatgctgcaacgtttg
gtgcccgatgctaaaattggcattggtcacgggcaaatggatggcaaaaaattagagcag
ctcatgctggcttttatggatggcgaatttgatattttggtgagcactaccattgttgaa
agcggactggatgtgccaaatgccaacaccatttttatcaataatgccaataattttggg
ttgagcgatttgcatcaaatgcgtgggcgagttgggagaagcaataaaaaagcattctgt
tattttataacaccagaatactcggcaatgactgaagatgcccgaaaacgcatcacggct
ttagagcaatttacagaacttggaagtgggtttaatatagccatgaaagatttagaaatc
cgtggcgcaggcgatttattaggaggagaacaaagcgggtttattaatgaaataggattt
gatacctatcaaaaaatactaaacgaagccattgaagaactcaaggaaaacgagtttaag
gatttgtataacgacgataaaaccgataaggtttatgtaaaagaggtaacgattgacacc
gattttgagttgttgtttcccgacgattacgtaaataatattacagaacgcttaaacttg
tacacgcaattaaacaacctaaatactgaagcggaattacaaaaatttgaaaccgaactc
atcgaccgttttggcgagttgccaacacaagtgaccgatttactaaatagtgtccaatta
aaatggatcgctaccaaattaggatttgaaaaaattattatgaaaaaaggcaaatttgtt
gggtattttgtaaacgatcaacaaagtccgtattaccaaagcgataactttacaaaagtt
cttaaatttgtacaatccaacccgggaatttgtaaaatgaaagaaaagcaaacccgaaat
ggtttaaggttattattaacttttgaatctgttaaatctgtaaaacaagccttagcaatt
ttaaaacctataatggcttaa
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