Hydrogenophaga sp. PBC: Q5W_12150
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Entry
Q5W_12150 CDS
T04491
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q5W_12150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_12150
Enzymes [BR:
hyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q5W_12150
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q5W_12150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
IstB_IS21
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOS79662
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All DBs
Position
2579898..2583386
Genome browser
AA seq
1162 aa
AA seq
DB search
MSLTLPALSPGKRHTQPRPGGSADALWLARLAEREQGAGRLTAIVTADANDAQRLIDELA
FFAPDLRITLFPDWETLPYDTFSPHQDLISERLATLWRISQRQHDGGADVVLIPATTALY
RLAPPSFLAGYTFHFKVKQSLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMG
SPVPYRVDLFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARARFRSRWRELL
EGDPTKSRLYKDMGNGVATAGIEYYLPLFFEETATVFDYLGEQATVVLHGELEPAFQRFW
QDTRERHRLLQGDPDRPILPPDALFLNAEQFFTQAKAHAQVVMRPGTSDVGDSAFAQALP
DLAVVRGADEPLAKLQAHLRASPQRALVLAESDGRRESLLDFLRASGLNPPAFDSLAEFQ
ASEEKTGIATAALATGFAWVEAGIDFITETELFAAGPTTRRRKKQEQVSDVDALIKDLSE
LNVGDPVVHAAHGIGRYRGLINLDMGEKNPDGTPALQEFLHLEYADKAVLYVPVSQLGLI
GRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSPQD
YEAFANDFGFEETADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAVTGG
KQVAFLAPTTLLAEQHYQTLVDRFGKWPVKIAEMSRFRSQKEITAAMKGIADGSVDIVVG
THKLLSEKAQFKNLGLLIIDEEHRFGVRHKEAMKQLRAEVDVLTLTATPIPRTLGMALEG
LRDLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRKQKL
EEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRAD
KFGLAQLHQLRGRVGRSHHQAYAYLLVPEIEGLTKQAAQRLDAIQQMEELGSGFYLAMHD
LEIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVKALKAGREPDLLAPLSVTTDINLHAP
ALLPNDYCGDVHLRLSFYKKLATARNTDQVDALLEEIVDRFGKPPPQAQTLIDVHRLRVL
SAPYGVAKVDAAPGVTNITFKPNPPIEPMRIIELIQKHKHIKLAGNEKLRIERALPEVKD
RVQLVRDVLRALGQPNKTTETA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaccctccccgcgctgagccccggcaagcgccacacccagccccgcccgggc
ggctcggccgacgcgctgtggcttgcccgcctggccgaacgcgaacaaggcgccggccgc
ctcaccgccatcgtcaccgccgacgcgaacgacgcgcagcgcctgatcgacgagcttgcc
ttcttcgcgcccgatctgcgcatcacgctgtttcccgactgggaaaccctgccctacgac
accttctcgccgcaccaggacctcatcagcgagcgcctggccacgctgtggcgcatctcg
cagcgccagcacgacggcggcgccgacgtggtgctgatccccgccaccaccgcgctgtac
cgactcgcgccgccgtccttcctggccggctacaccttccacttcaaggtcaagcagtcg
ctggacgaggcacggctcaagggccagctcacgctcgcgggctaccagcacgtcacacag
gtggtgagcccgggtgagtacgccgtgcgcggcggcctcatcgacctgttccccatgggc
agccccgtgccctaccgcgtggacctgttcgacgacgagatcgacagcatccgcaccttc
gaccccgacagccagcgcagcctgtaccccgtgaacgaggtgcgcctgctgcccggccgc
gagttccccatggacgacgcggcacgcgcgcgctttcgcagccgctggcgcgaactgctc
gaaggcgacccgaccaagagccgcctgtacaaggacatgggcaacggcgtggccaccgcc
ggcatcgagtactacctgccgctgttcttcgaggagacggccacggtgttcgactacctc
ggcgagcaggccacggtggttctgcacggcgagctggagcccgccttccagcgcttctgg
caagacacgcgcgagcgccaccgcctgctgcagggcgacccggaccgccccatcctgccg
cccgacgccctcttcctcaacgccgagcagttcttcacccaggccaaggcacacgcccag
gtggtgatgcgccccggcaccagcgatgtgggcgacagcgccttcgcccaggccctgccc
gacctggccgtggtgcgcggcgccgacgagccgctggccaaactgcaggcccacctgcgc
gccagcccgcagcgcgcgctggtgctcgccgaaagcgacggccgccgcgaaagcctgctc
gacttcctgcgcgccagtggcctgaacccgcccgccttcgacagcctggccgaattccag
gccagcgaggagaagaccggcatcgccaccgccgcgctggccaccggcttcgcctgggtc
gaggccggcatcgacttcatcaccgagaccgaactcttcgccgccggccccaccacgcgc
cggcgcaagaagcaggaacaggtgagcgacgtcgacgcgctgatcaaggacctgtccgag
ctcaacgtgggcgaccccgtggtgcacgccgcgcacggcatcggccgctaccgcgggctc
atcaacctcgacatgggcgagaagaaccccgacggcacgcccgcgctgcaggagttcctg
cacctggagtacgccgacaaggccgtgctctacgtgcccgtgagccagctcggcctgatc
gggcgctacaccggcgtaagcgccgacgaagccccgctgcacaaactgggcagcggccag
tgggagaaggccaagcgcaaggccgccgagcaggtgcgcgacgccgccgccgagctgctc
aacatctacgcgcgccgcgccgcgcgccagggccacgcctttcgctactcgccgcaggac
tacgaggccttcgccaacgacttcggcttcgaggagaccgcagaccaacgcgccgccatt
catgccgtggtgcaggacatgatcagcccgcagcccatggaccgcctggtttgcggcgac
gtgggcttcggcaagaccgaggtcgcgctgcgcgcggccttcgtggccgtcacgggcggc
aagcaggtggccttcctcgcgcccaccacgctgctggccgaacagcactaccagaccctg
gtggaccgcttcggcaaatggccggtgaagatcgccgagatgagccgcttccgctcgcaa
aaagagatcacggcggccatgaagggcatcgccgatggctcggtggacatcgtcgtgggc
acgcacaagctgctgagcgagaaggcgcagttcaagaacctgggcctgctcatcatcgac
gaggagcaccgcttcggcgtgcgccacaaggaggccatgaagcaactgcgcgccgaggtg
gacgtgctcacgctcaccgccacgccgatcccgcgcaccctgggcatggcgctcgaaggc
ctgcgcgatctgagcgtgatcgccaccgcgccgcagcgccgcctggccatcaagaccttc
gtgcgcaacgaaggcaacggcgtcatccgcgaggccgtgctgcgcgagttgaagcgcggc
gggcaggtgtacttcctgcacaacgaggtcgagaccatcgagaaccgcaaacaaaagctc
gaggagatcctgccggaggcgcgcatcgcggtcgcgcacggccagatgcccgagcgtgaa
ctcgagcgcgtgatgcgcgacttcgtggcccagcgctacaacctgctgctgtgctcgacc
atcatcgagaccggcatcgacgtgcccacggccaacaccatcgtcatgagccgcgccgac
aaattcggcctggcgcagctgcaccagttgcgcggccgcgtgggccgcagccaccaccag
gcctacgcctacctgctggtgcccgagatcgagggcctcaccaagcaggccgcgcagcgc
ctggacgcgatccagcagatggaggaactgggcagcggcttctacctggccatgcacgat
ctggagatccgcggcgccggcgaagtgctgggcgagaaccagagcggcaacatgctggag
gtgggcttccagctctacaacgagatgctgtccgaggccgtgaaggcgctcaaggctggc
cgcgagcccgacctgctggcgccgctgtcggtcaccaccgacatcaacctgcacgccccc
gccctgttgcccaacgactactgcggcgacgtgcacctgcgtctgagcttctacaagaag
ctggccactgcccgcaacaccgatcaggtggacgccctgctcgaggaaatcgtcgaccgc
ttcggcaaaccaccgccgcaggcgcagacgctcatcgacgtgcaccgcctgcgcgtgctc
agcgcgccctacggcgtggccaaggtcgatgccgcgcccggcgtcaccaacatcaccttc
aagcccaacccgccgatcgaaccgatgcgcatcatcgagctcatccagaaacacaagcac
atcaagctcgcgggcaacgagaagctgcgcatcgagcgcgccctgcccgaggtgaaagac
cgcgtgcaactcgtgcgcgacgtgctgcgcgccctgggccaacccaacaagaccaccgaa
accgcatga
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