Hymenobacter jejuensis: FHG12_10905
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Entry
FHG12_10905 CDS
T06049
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyj
Hymenobacter jejuensis
Pathway
hyj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FHG12_10905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyj03400
]
FHG12_10905 (mfd)
Enzymes [BR:
hyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FHG12_10905 (mfd)
DNA repair and recombination proteins [BR:
hyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FHG12_10905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDA60583
UniProt:
A0A5B8A1J0
LinkDB
All DBs
Position
complement(2639022..2642459)
Genome browser
AA seq
1145 aa
AA seq
DB search
MKVTDFLQLYRLDPTVMTVGARLNPATRHSLRAPEPKPTEEALQLRLHLRGLVGSQDAVI
AAALHGLYPEQHHLFILHDKDEANYFQADLRHLLGNEHEPLLFPSSYKRPYEFDETENAN
VLMRAEVLNRLNSKPTRGELIVTYPEALFEKVINRKSLVANTFLVKVGEKLDVNFISEML
AEYDFERTDFVYEAGQFAVRGGIVDIFSYANELPYRIELFGDEVETIRTFNPETQLSVEQ
RPQVSIIPNVQTKLLQETREAFLDFIPRNTTVWAKDVRQTIDIVGESYDKAEERFQLVLE
AAGGTQIVSKPADLFETGRSFKKLLDNFAVVEFGKRFHFKNAEEFHFSSKPQPSFNKDFN
RIVKDLHKHQQAGFTCIISADSVRQADRLRTIFDELDNNVRFDHILLALREGYIDETLKL
TVYTDHQLFERFYRAQETRKFSKNKALTLKELRTLKPGDYVVHQDYGIARFAGLMQIEIN
DKLQEAIRLVYRDDDVLTVSIHALHKIAKYSGAEGTPPTMSKLGSPEWENKKKSVKKKVK
DIAAELIRLYAKRKTAPGYAFAKDSFMQAELESSFIYEDTPDQGKATEDVKRDMEVPHPM
DRLICGDVGFGKTEIAIRAAFKAVADGKQVAVLVPTTILAMQHYKTFRDRLSNLPVNVEY
VNRFKSTKQIKETLGRVAEGKTDILIGTHRLTNKDIKFKDLGLLVIDEEQKFGVKTKDKL
KELKVNVDTLTLSATPIPRTLHFSLMGARDLSVIATPPPNRQPVQTELHVFDELLIRDAI
AREIKRGGQVFLVHNRVKDIEEMANMVLRLVPDARVTYIHGQMEGDLLEKRMMKFVDGEY
DVLVSTNLIESGLDIPNANTIIINRAHLFGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGL
PSDARKRLSTLEEFSDLGAGFNVAMRDLDIRGAGNLLGGEQSGFINDLGFETYHQILDDA
VQELKETEFRDLFIGDQTGRLQDAAGTARPKECNIETDLQILIPEQYVSSVSERLQLYSK
LDRVKDPAELRKLVAGIVDRFGPLPDEVGQLVDIVKLRWQGCQAGFEKLTLKKNLLKGYI
PAENNEAYFQGETFGHILNYVQTHPRTAKVKERKDQLIVSIEEVKNVQAAKRILAELGSE
EKVGV
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagtcactgattttcttcagctctaccgcctcgaccccaccgtcatgacggtggga
gcccgcttgaaccctgccactcgccactcgttgcgggcccccgaaccgaaaccgacggag
gaagcccttcagctgcgtttgcatctgcgtggcctcgtgggtagccaggatgcggtgatt
gcggcggccctgcatggattgtatccggagcagcatcacttgttcattttgcacgacaag
gatgaagctaattatttccaggccgacctgcggcatctgcttggtaatgagcacgaaccg
ttgttgttcccgagttcctacaagcggccctacgagttcgacgaaacggaaaatgccaac
gtgttgatgcgagccgaggtcctcaaccgcctaaactcgaaacctacgcgcggcgagctg
atcgtgacttatcccgaagcgctattcgaaaaagttattaaccgcaagtctttggtagcc
aatacgttcctggtaaaggtaggcgagaagctggacgtcaactttatcagtgagatgctg
gccgaatacgatttcgaacgaacggactttgtgtatgaggcgggacagtttgcggtgcgc
ggcggcatcgtggacatttttagttacgccaacgagctgccctatcgcatcgaactcttt
ggcgatgaggtcgaaacgatccggacgttcaaccccgagacacagctttcggtagagcag
cggccgcaggtgagcatcattccgaacgtacaaaccaagctgttgcaggaaacccgcgag
gcgttcctggatttcattccgcgcaacacgaccgtttgggccaaggacgtgcgccagacc
atcgacatcgtgggcgagtcgtacgacaaggccgaagaacggtttcaactggtgctggaa
gcggctggcggcacccagattgtgagcaagccagcagatttgttcgagaccggacgctcg
ttcaaaaagctgctcgacaacttcgcggtggtggagtttggcaagcgctttcacttcaaa
aacgccgaggaatttcacttctccagcaagccgcagcccagcttcaacaaagacttcaac
cgcattgtcaaggacttgcacaagcaccagcaggcaggttttacgtgcatcatcagcgcc
gactcggtgcggcaggccgaccggctgcgcaccattttcgacgagctcgacaacaacgtc
cgcttcgatcacatcctgctggccctgcgcgaaggctacatcgacgaaacgctgaaactg
acggtatacacggatcaccaactgtttgagcggttttatcgagcgcaggaaacccgaaaa
ttctctaagaataaagctctcaccctcaaagagttacgcaccctcaagcccggcgactac
gtggtgcatcaagattacggcattgcgcgcttcgcgggcttgatgcagatcgagatcaac
gacaagctgcaagaggccattcggctggtgtaccgcgacgacgacgtgctgacggtcagc
attcacgccctgcacaagattgcgaagtactcgggcgccgagggcacgccgcccaccatg
agtaagctgggctccccggaatgggaaaacaagaaaaagtcggttaagaagaaggttaag
gatattgcagccgagcttattcggctgtacgccaagcgcaaaacggcgccgggctacgcc
ttcgccaaggactcgtttatgcaggccgagctggaatcgtcgttcatttacgaagacacg
cccgaccagggcaaggccaccgaggacgtgaagcgcgacatggaagtgccgcaccccatg
gaccgcctcatctgcggcgacgtgggctttggcaagaccgaaattgctattcgggcggcc
ttcaaagccgtggccgacggcaagcaggtggccgtgctcgtcccgacgaccattctggcg
atgcagcactacaaaaccttccgcgaccggctttccaacctgccggtgaacgtggaatac
gtcaaccgctttaagagcaccaagcagatcaaggagacgctggggcgcgtggccgagggc
aaaaccgacattctgatcggaacgcataggctcaccaataaagacatcaaattcaaggac
ttaggcttgctggtgattgacgaagagcagaagtttggcgtcaagaccaaagacaagctc
aaggaattgaaggtgaacgtggatacgcttacgctatcagccacgccgattccgcgcacg
ctgcacttctcgcttatgggcgcccgcgacctgtcggtgatcgccacgccgccgccaaac
cgccaacccgttcagacggaattgcacgtatttgacgagctgctgattcgcgatgccatt
gcccgcgaaatcaagcgcggcgggcaggtgtttctggtgcacaaccgcgtcaaggacatc
gaagaaatggccaacatggtgctgcgcctcgtgcccgacgcccgcgtaacttacatccac
ggccagatggaaggcgacttgctcgaaaagcgcatgatgaaatttgtggacggcgaatac
gacgtgctggtttctactaacctgattgagagcggtttggatattccgaatgccaacacc
atcatcatcaaccgcgctcacctttttggtttgagcgacctgcaccagatgcgcggccgc
gtgggccgatccaataagaaagcgtattgctacctgcttacgccgcccgtggccggcctg
ccctccgacgcccgcaaacgcttgagcacgctggaagagttttcggacctgggcgcgggc
ttcaacgtggccatgcgcgacctcgacatccgcggagccggcaacctgttgggcggtgag
caatcgggctttatcaacgatctgggcttcgagacctaccaccagattctggacgatgcg
gtgcaggaactgaaggaaaccgagttccgcgacctgtttatcggcgaccagacgggccgc
ttgcaggacgctgctggcacggcccgccccaaggagtgcaacatcgaaaccgatttgcaa
atccttattcctgagcaatatgtgagcagcgtgtcggagcgcttgcagctttactcaaag
ctcgaccgcgtaaaagaccctgctgagctgcgcaaattggtagccggcatcgtggaccgc
ttcgggccgctgccggacgaagtagggcaacttgtggacatcgtgaagctgcggtggcag
ggttgccaggcaggattcgagaagctcacgctgaagaaaaacctgctcaaaggctacatt
ccggccgaaaacaacgaggcctacttccagggcgagaccttcggccacatcctcaactac
gtgcaaacgcacccgcgcaccgccaaagtcaaggagcgcaaagaccaactcatcgtcagc
attgaggaggtgaagaacgtgcaggccgccaagcggattttggcggagttgggcagcgaa
gagaaggtcggtgtataa
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integrated database retrieval system
