Hymenobacter yonginensis: O9Z63_14850
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Entry
O9Z63_14850 CDS
T08743
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyk
Hymenobacter yonginensis
Pathway
hyk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O9Z63_14850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyk03400
]
O9Z63_14850 (mfd)
Enzymes [BR:
hyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O9Z63_14850 (mfd)
DNA repair and recombination proteins [BR:
hyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O9Z63_14850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WBO86652
LinkDB
All DBs
Position
complement(3423670..3427146)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTLGARLNPATRRSLRPADKAEAPVRLHLRGLVGSQDAVLAAAVHQEYPDQHHLFILHDR
DEAAYFLADLQHLLPDEEPLLFPTSYKRPYSFDETENANVLMRAEVLNKLNSHRGPKTTA
EQAADDAADAAETDGQGKKRGKASAKETAGVLIVTYPEALFEKVINKKSLVANTFLVKVG
DKLDVNFVSDMLAEYDFERSDFVYEAGQFAVRGGIVDIFSYANELPYRIELFGDEVETIR
TFDPESQLSVEKRQQVSIIPNVQTKLLQETREAFLEFIPKNTAVWAKDVRQTLDVVDEYF
DKAEAGFQELLAVAGGTQVVSKPAELFESAKTLRKLLEGFAVVEFGKRFHFKAGAEEFQF
SAKPQPSFGKDFNRIVKNLHDNQAKGYTNIIAAEQVRQADRLRTIFDELDNNVQFQHLLL
GLREGFIDETLRLAIYTDHQLFERFYRAQETRKFSKKKALTLKELRTLVPGDYVVHQDYG
IARFAGLTQVEINDRLQEAIRLVYRDDDVLTVSIHALHKIAKYSGAEGTPPTMSKLGSPE
WENKKKSVKKKVKDIAAELIRLYAKRKTAPGHAFAHDSFMQAELESSFIYEDTPDQAKAT
EDVKRDMEVPHPMDRLVCGDVGFGKTEVAIRAAFKAVADGKQVAVLVPTTILAMQHYKTF
RERLGNLPVTVEYVNRFKTTKQIKETLGRVADGKTDILIGTHRLTNKDVQFKDLGLLVID
EEQKFGVKTKDKLKEIKVNVDTLTLSATPIPRTLHFSLMGARDLSVIATPPPNRQPVQTE
LHVFDELLIRDTISRELKRGGQVFFVHNRVKDIEEQASMILRLVPDARVTYVHGQMDGDL
LEKRMMKFVDGDYDVLVATTLIESGLDIANANTILINRAHMHGLSDLHQMRGRVGRSNKK
AYCYLLTPPVAGLPSDARKRLSTLEEFSDLGAGFNVAMRDLDIRGAGNLLGGEQSGFIND
LGFETYHQILDEAVQELKETEFRDLFLGDPTQRLQEAAGTGRPKECNIETDLQVLIPDRY
VSSVSERLQLYSKLDRAKNAEELRKLLTGIVDRFGPLPQEVEQLADIVRLRWLACQTGFE
KLTLKKNLLKGFIPATNNEPYFQGATFGNILSYVQTHPRSASMKERKEQLIISFEDVKSV
QAAKRILSELVSEETVGV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgggcgcgcgcctgaaccccgccacccgtcgctccctgcggcccgccgacaag
gccgaagcgcccgtgcgcctgcacctgcgcggcctcgtaggctcccaggatgccgtgctg
gccgccgccgtccaccaggagtatcccgatcagcaccacctgttcatcctccacgaccgg
gacgaggccgcctacttcctggccgacctgcagcacctgcttcccgacgaggagcctctc
ctgttccccacctcctacaagcgcccttacagcttcgacgagacggaaaacgccaacgtg
ctgatgcgggccgaggtgctgaacaagctgaactcgcaccgcggccccaaaaccaccgcc
gaacaggccgccgacgacgcggccgacgcggcagaaaccgacggccagggcaagaagcgc
ggaaaggccagcgccaaagaaaccgccggtgtgctcatcgtgacataccccgaggccctg
ttcgagaaggttatcaacaagaaaagcctcgtggccaacacctttctggtgaaggtgggc
gacaagctggacgtgaacttcgtgagcgacatgctggcggagtacgacttcgagcggagc
gactttgtgtacgaggccggccagtttgccgtgcgcgggggcatcgtggacatcttctcc
tacgccaacgagctgccctaccgcatcgagctgttcggggatgaggtggagacgattcgc
acgtttgacccggaaagccagctgtcggtggagaagcggcagcaggtgagcatcatcccg
aacgtgcagaccaagctgctacaggagacgcgggaggcgtttctggagtttatcccgaaa
aacaccgccgtgtgggccaaggacgtgcgccagacgctggacgtggtggatgagtacttc
gacaaggccgaggcgggcttccaggagctgctggcggtggcgggcggcacccaggtggtg
agcaagccggccgagttgtttgagtcggccaagacgctacgcaagctgctggaagggttt
gcggtagtggagttcggcaagcggttccacttcaaggccggcgcggaggagttccagttc
agcgccaagccccagcccagcttcggcaaggacttcaaccgcatcgtgaagaacctgcac
gacaaccaggccaagggctacaccaacatcattgccgccgagcaggtacgccaggccgac
cgcctgcgcaccatcttcgacgagctggacaacaacgtgcagtttcagcacctgctgctg
gggctgcgcgaagggttcatcgacgagacgctgcgcctggctatctacaccgaccaccag
ctgttcgagcggttctaccgggcccaggaaacccgcaagttctccaagaaaaaggccctc
acgctaaaagagctgcgcaccctggtacccggcgactacgtggtacaccaggactacggc
attgcccgcttcgccggcctcacccaggtagaaatcaacgacaggctgcaggaggccatc
cggctggtgtaccgcgacgacgacgtgctgaccgtcagcatccacgccctgcacaagatt
gccaagtacagcggggccgagggcacgccgcccaccatgagcaagctgggctcgccggag
tgggaaaacaagaagaaatcggtcaagaaaaaggtgaaggacattgcagccgagctgatc
cggctgtacgccaagcgcaaaaccgcgcccggccacgccttcgcccacgactcctttatg
caggccgagctggaatcgagctttatctacgaggacacccccgaccaggccaaggccacc
gaggacgtgaagcgcgacatggaggtgccccaccccatggaccgcctcgtgtgcggcgac
gtgggtttcggcaagacggaagtagccatccgggccgccttcaaggccgtggccgacggc
aagcaggtggccgtgctggtgcccaccaccatcctggccatgcagcactacaaaaccttc
cgcgagcggctcggcaacttgcccgtgacggtggagtacgtgaaccgcttcaaaaccacc
aagcagatcaaggaaaccctgggccgggtggccgacggcaaaaccgacatcctcatcggc
actcaccgcctcaccaacaaggacgtgcagttcaaggacctgggtctcttggtgattgac
gaggagcagaagttcggggtgaaaaccaaggacaagctcaaggaaatcaaggtgaacgtg
gacacgctcacgctctcggccacgcctattccgcgcaccctgcacttctcgctgatggga
gcccgcgacttgagcgtgattgccacgcccccgcccaaccgccagccggtgcagacggag
ctgcacgtgttcgatgagctgctgatccgcgacaccatttcgcgggagctgaagcggggc
gggcaggtatttttcgtgcacaaccgcgtgaaggacattgaggagcaggccagcatgatt
ctgcgcctcgtgcccgatgcccgcgtgacctacgtgcacggccagatggacggcgacctg
ctggaaaagcgtatgatgaagttcgtggacggcgactacgacgtgctggtggccaccacc
ctcatcgaatcgggcctcgacattgccaacgccaacaccatcctcatcaaccgcgcccac
atgcacggcctctccgacctgcaccagatgcggggccgcgtgggccgctccaacaaaaag
gcctactgctacctgctcacgcccccggtggccggcctgccctccgacgcccgcaagcgc
ctgagcaccctggaggaattctcggacctgggcgcgggcttcaacgtggccatgcgcgac
ctggacatccggggcgcgggcaacctgctgggcggcgagcagtcgggcttcatcaacgac
ctaggctttgaaacctaccaccagattctcgacgaagccgtgcaggagctcaaggaaacc
gagttccgcgacctgttcctcggcgaccccacccagcgcctgcaggaagccgccggcacc
ggccgtcccaaggagtgcaacatcgaaaccgacttgcaggtgctcattccggaccgctac
gtgagcagcgtgtcggagcgcctgcagctctacagcaagctcgatagggccaaaaacgcc
gaggagctacgcaagctgctcaccggcatcgtggaccgcttcgggccgctgccccaggag
gtggagcagctcgccgacatcgtgcgcctgcgctggctggcctgccagaccggcttcgaa
aagctcacgctcaagaagaacctgctcaaaggcttcatcccggccaccaacaacgagccc
tacttccagggcgccaccttcggcaacatcctcagctacgtgcagacccacccgcgctcc
gcctccatgaaggagcgcaaagaacagctcatcatctccttcgaagacgtgaaaagcgtc
caggccgccaagcggatcctgagcgagctggtgagtgaggaaacggtgggggtgtaa
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integrated database retrieval system
