Hydrogenophaga crassostreae: LPB072_10405
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Entry
LPB072_10405 CDS
T04505
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPB072_10405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyl03400
]
LPB072_10405
Enzymes [BR:
hyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB072_10405
DNA repair and recombination proteins [BR:
hyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPB072_10405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AOW13206
UniProt:
A0A167IF57
LinkDB
All DBs
Position
complement(2247121..2250705)
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AA seq
1194 aa
AA seq
DB search
MDLPKLNPGKRYTLPRPSGSADALMLAQLAQRDKGQGRLTAIVTSDASDAQRLIDEMGFF
APDLRIALFPDWETLPYDGFSPHQDLISERLATLWRIHTRGQAQHSEGSADVVLVPATTA
LYRLAPPAFLAGYTFHFKVKQKLDEAKLKSQLTLAGYQHVTQVVSPGEYAVRGGLIDLFP
MGSLVPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARAKFRSRWRE
LLEGDPTKSRIYKDVGNGVATAGIEYYLPLFFEETATVFDYLGDAATVVLHGDLEPAFQR
FWQDTQDRYKIVRTDPERPALPPESLFLSAEQFYSQANAHAQLAVRSHAPTLPAARGSLP
PEGAPTSMGRPGAGAPLEDVADNAFAQKLGDLSVVRGAEDPLSRLQAHIRNTAHRILILA
ESEGRRESLLDFLRASGLNPPAFDSLTEFRDSIEKVGIATAALTVGFSSVEDGIDFVTET
ELFAAGPSARRRRKQEQVSDVDALIKDLSELNVGDPVVHNAHGIGRYRGLINMDMGDKNP
DGSPALMEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPMHKLGSGQWEKAKRRAAE
QVRDAAAELLNIYARRAARVGHAFRYSAQDYETFANDFGFDETADQNAAIHAVIQDMISP
QPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAFLAPTTLLAEQHFQTLVDRFAKWPVK
IAEMSRFRSQKEITAALKGVADGTVDIVVGTHKLLSEKTKFKDLGLLIIDEEHRFGVRHK
EQMKQLRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGVIR
EAVLRELKRGGQVYFLHNEVETIENRKQKLEEILPEARIAIAHGQMPERDLERVMRDFVA
QRFNVLLCSTIIETGIDVPTANTIVMARADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDI
EGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEML
SEAVASLKAGREPDLLSPLSVTTDINLHAPALLPNDYCGDVHLRLSFYKKLATAKTTDQV
DGLLEEIVDRFGKLPAQAQTLIDVHRLRVLSAPYGVIKVDAAPGVTNITFKANPPVEPMK
IIELIQKNRHIKLAGNEKLRIERELPEVKDRVLLVRDVLRNLGQPVKVAAPATT
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacctgcccaagctcaaccccggcaaacgctataccctgccccgccccagcggctcg
gccgacgcgctcatgctcgcccagctcgcccagcgcgacaaaggccagggccgcctgacc
gccatcgtcacctctgacgcctcggatgcccagcgcctgatcgacgagatgggttttttc
gcaccggatctgcgcatcgccctgttccccgactgggaaaccctgccctacgacggcttc
tcgccacaccaggacctcatctcagagcgcctggccacgctctggcgcatccacacccgc
ggccaggcccaacacagcgaaggcagcgccgacgtggtgctcgtgcccgccaccaccgcg
ctctaccggttggccccgcccgccttcctcgccggctacaccttccatttcaaggtcaaa
caaaagctcgacgaagccaaactgaaaagccagctcaccctggccggctaccagcatgtg
acccaggtggtcagtccgggcgaatacgcggtgcgcggcggcctgatcgacctgttcccc
atgggctcgctcgtgcccttccgggtcgacctgttcgacgacgagatcgacagcatccgc
accttcgaccccgacagccagcgcagcctgtatccggtgcccgaagtgcgcctgctgccc
ggccgcgaattcccgatggacgatgcggcgcgggccaaattccgcagccgttggcgcgag
ttgctggagggtgacccgaccaagagccgcatctacaaagacgtgggcaacggcgtggcc
accgccggtatcgagtactacctgccgctgttcttcgaagaaaccgccacagtgttcgac
tacctgggcgatgcggccaccgtcgttttgcacggtgacctcgaacccgccttccagcgt
ttctggcaagacacgcaagaccggtacaaaattgtgcgcaccgatccggagcgccccgca
ttgccgcccgaatcgctgttcctgagcgccgaacagttctacagccaggccaatgcccat
gcgcagctcgccgtgaggagccatgcccccacgctccccgctgcgcgtggttcgctgccc
cccgagggggcgcccaccagcatggggcgtcccggcgctggggcacctctggaagacgtg
gccgacaatgccttcgcgcaaaagctgggcgacctctcggtggtgcgcggcgcagaagac
ccgctcagccgcctgcaagcccacatccgcaacacggcgcaccgcatcctgatcctggcc
gaaagcgagggccggcgggaaagcctgctggatttcctgcgcgccagcggcctgaaccca
cccgcctttgattcgctgaccgaattccgggacagcatcgagaaggtcggcatcgccacc
gctgcgttgacggtcggtttttcttcggtcgaagacggcatcgacttcgtcaccgaaacc
gaactgtttgccgcaggcccctcggcgcgtcgtcgccgcaagcaggagcaggtcagcgat
gtcgatgcgctgatcaaggacctgtccgagctcaacgtgggcgacccggtggtgcacaac
gcgcacggcatcggccgctaccgcggactgatcaacatggacatgggcgacaaaaacccc
gacggttcgcccgcattgatggaattcctgcacctggaatacgccgacaaggccgtgctc
tatgtgcccgtgagccagttgcagctgattggccgctacaccggtgtctcagccgacgaa
gcgcccatgcacaagctgggcagcggacaatgggaaaaggccaagcgccgcgcagccgaa
caggtgcgcgacgcagccgccgaactgctcaacatctacgcccgccgggccgcgcgcgtg
ggccatgccttccgctattcggcgcaggactacgaaaccttcgccaacgattttggtttc
gatgaaacggccgaccagaacgccgccatccacgccgtcattcaagacatgatcagcccg
caacccatggaccggctggtctgcggcgatgtgggctttggcaaaaccgaggtggccttg
cgcgcggccttcgtggccgtgaccggtggccggcaggtggccttcctcgcgccgaccacg
ctgctggccgagcagcacttccagacgctggtggaccgcttcgccaagtggcctgtgaag
atcgccgagatgagccgcttccgctcccaaaaggaaatcaccgccgcgctcaagggcgtg
gccgacggcacggtggacatcgtggtcggtacccacaagctgctcagcgaaaagaccaaa
ttcaaagacctgggcctgctcatcatcgacgaggaacaccggtttggtgtgcgccacaaa
gagcagatgaaacagctgcgcgccgaagtggatgtgctcaccctcaccgccacgccgatt
ccccgcacgctgggcatggccctggaaggcctgcgcgatctgagcgtgatcgccaccgcg
ccacagcgccgtctggccatcaagacttttgtgcgctcggaaaacaacggcgtgatccgc
gaagccgtgttgcgcgaactcaagcgcggcggacaggtttacttcctgcacaacgaagtc
gagaccatcgagaaccgcaaacagaagctggaagaaatcctgcccgaagcgcgcattgca
attgcccatggccagatgccggagcgcgatctggagcgggtgatgcgcgattttgtggcg
cagcgcttcaacgtgttgctttgctcaaccatcatcgaaaccggtatcgacgtgcccacc
gccaacaccatcgtgatggcacgggccgacaagtttggcctggcgcagctgcaccagttg
cgcggccgcgtgggccgcagccaccaccaagcctatgcctacctgatggtgcccgacatc
gaaggcctgaccaaacaggcggcccagcggctggacgccattcagcaaatggaggaactg
ggcagtggcttctacctcgccatgcacgatctggagattcgcggcgccggcgaagtgctg
ggcgaaaaccagagcggcaacatgctggaagtgggcttccagctctacaacgaaatgctg
agcgaagccgtggcctcgctcaaggcggggcgcgagcctgacctgctttcgccgctcagc
gtcacgaccgacatcaacctgcatgcccccgccctgctgcccaacgactactgcggcgat
gtgcacctgcgtctgtccttttacaagaagctggccacggcgaaaaccaccgaccaggtg
gacggcctgctggaagaaatcgtggaccgtttcggcaagctgcccgcgcaggcgcagacg
ctcatcgacgtgcaccgcctgcgggtgctcagcgccccctacggcgtgatcaaggtcgac
gcggcgcccggggtgaccaacatcaccttcaaggccaacccgcccgtcgaaccgatgaag
atcatcgagctgatccagaagaatcgccacatcaaactggcgggcaatgaaaagctgcgc
atcgaacgggagctgcccgaggtcaaagaccgggtgctgctggtgcgcgatgtattgcgc
aatcttgggcaaccggtgaaagtggccgcacctgcaaccacctga
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