Hydrogenophaga sp. BPS33: F9K07_12850
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Entry
F9K07_12850 CDS
T06379
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F9K07_12850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_12850 (mfd)
Enzymes [BR:
hyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9K07_12850 (mfd)
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F9K07_12850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QHE85727
UniProt:
A0A6P1J053
LinkDB
All DBs
Position
complement(2758347..2761838)
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AA seq
1163 aa
AA seq
DB search
MDLPQLSPGKRHTVPHPGGSADALLLAQLGAREKAAGRLTAIVTADANDAQRLIEEVAFF
APGLRCAMFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRL
APPSFLAGYTFHFKVKQKLDEAKLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSL
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEG
DPTKSRIYKDIGNGVATAGIEYYLPLFFDDTATVFDYLGSGATVVLHGDLEPAFQRFWQD
TKDRHRLLKGDPERPVLPPEALFLNAEQFYTQANGHALFVVRPPQQEIEHGAQVQKLGDL
SVVRGAEDPLSRLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEFQDS
DEKTGIATAALTTGFSWLEDGIDFVTETELFAAGPTTRRRKKQEQVSDVDALIKDLSELN
LGDPVVHNAHGIGRYRGLVNMDMGEKNPDGTPALMEFLHLEYADKAVLYVPVSQLQLIGR
YTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYE
VFANDFGFEETADQKAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQ
VAFLAPTTLLAEQHFQTLSDRFSKWPVKIAEMSRFRSAKEIGTAAKGLADGSVDIVVGTH
KLLSESVKFKDLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLR
DLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEE
ILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKF
GLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLE
IRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVASLKAGREPDLLAPLSVTTDINLHAPAL
LPNDYCGDVHLRLSFYKKLATAKNTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISM
PYGVVKVDAAPGVTNITFKANPPFEPMRIIEMIQKNKHIKLAGNDKLRIERPLPEVKDRV
QMVRDVLRSLGQPVPTPTPAMAR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacctgccccaactctcccctggcaaacgccacaccgtgccccaccccggcggctcg
gccgatgccctgttgctcgcccagctgggtgcgcgcgaaaaggccgccggccgcctcacc
gccatcgtgacggccgatgccaacgacgcccagcgcctgatcgaagaagtggccttcttc
gcgcccgggctgcgctgcgccatgtttcccgattgggagaccctgccctacgacaccttc
tcgccgcaccaggacctgatcagcgaacgcctggccacgctgtggcgcatctcgcagcgc
gacaaggacaccggcgccgacgtggtgctgatcccggccaccaccgcgctctaccgtctc
gcgccgccttcgttcctggcgggctacaccttccacttcaaggtcaagcaaaagctcgac
gaggccaagctcaagggccagctcaccctggccggctaccagcacgtcacgcaggtggtg
agcccgggcgagtacgcagtgcgcggtggcctgatcgacctcttccccatgggcagcctg
gtgccctaccgcgtggacctgttcgacgacgagatcgacagcatccgcaccttcgacccc
gacagccagcgcagcctgtacccggtgaacgaggtgcgcctgctgcccgggcgcgagttc
ccgatggacgacgcggcgcgcgcgaaattccgcagccgctggcgcgaactgctcgagggc
gacccgaccaagagccggatctacaaggacatcggcaacggtgtggcaaccgccggcatc
gagtactacctgccgctgttcttcgacgacacggcgacggtgttcgactaccttgggtca
ggtgcaactgtggtgctccacggcgacctcgaaccggccttccagcgcttctggcaagac
acgaaggaccgccatcgcctgctcaagggcgatcccgagcggccggtgctgccgcccgag
gccttgttcctcaatgccgagcagttctacacgcaggccaatgggcatgcgctgttcgtg
gtgcgcccgccgcagcaggagatcgaacacggcgcgcaggtgcagaagctgggcgacctc
tccgtggtgcgtggcgcagaagatccgctctcgcgcctgcaggcccacatccgcaacacc
gcgcaccgcgtgctgctgctggccgagagcgacggccggcgcgagagcctgctcgacttc
ctgcgcgccagcggcctgaacccgcccgccttcgactcgctggccgagttccaggacagc
gacgagaaaaccggcatcgctaccgcagcgctgaccaccggcttctcctggctcgaagac
ggcatcgatttcgtcaccgagaccgaactcttcgccgccgggccgaccacgcgccggcgc
aagaaacaggaacaggtgagcgacgtcgacgcgctgatcaaggacctgtccgagctcaac
ctcggcgacccggtggtgcacaacgcacacggcatcggccgctaccggggcctcgtgaac
atggacatgggcgagaagaaccccgacggcacaccggcgctgatggagttcctgcacctc
gaatacgccgacaaggccgtgctctatgtgcccgtgagccagttgcagctgatcggccgc
tataccggcgtgagcgcggacgaggcgccgctgcacaagctgggcagcggccaatgggaa
aaggccaagcgcaaggcggccgagcaggtgcgcgacgcggccgctgaactgctcaacatc
tacgcccgccgcgccgcgcgccagggccacgcgttccgctattcggcgcaggactacgaa
gtgttcgccaacgacttcggcttcgaggaaacggccgaccagaaggccgcgatccacgcc
gtcattcaggacatgatcagcccgcgcccgatggaccgcctggtgtgcggcgacgtgggc
ttcggcaagaccgaggtcgcgctgcgcgccgcgttcgtcgcggtcaccggcgggcggcag
gtcgcgttcctggcgcccaccacgctgctggccgagcagcatttccagaccctgtccgat
cgcttttccaagtggccggtgaagatcgccgagatgagccgctttcgctccgcgaaggag
atcggaaccgccgccaaaggcctggccgacggctcggtggacatcgtggtcggcacacac
aagctgctgagcgagagcgtgaaattcaaggacctgggcctgctcatcatcgacgaggag
caccgtttcggcgtgcgccacaaggagcagatgaaggccttgcgcgccgaggtcgacgtg
ctcacgctcaccgccacgccgatcccgcgcacgctgggcatggcgctcgaaggcctgcgc
gacctgtcggtgatcgccaccgcgccgcagcgccgcctggccatcaagaccttcgtgcgc
aacgaaggcaacggcgtgatccgcgaggccgtgctgcgcgaactcaagcgcggcgggcag
gtgtacttcctgcacaacgaggtggagacgatcgagaaccggcgccagaagctggaggaa
atccttcccgaggcgcgcatcgccatcgcgcatgggcagatgcccgagcgcgagctggag
cgcgtgatgcgcgacttcgtggcccagcgtttcaacgtgctgctgtgctcgaccatcatc
gagaccggcatcgacgtgcccacggccaacaccatcgtgatgagccgcgccgacaagttc
ggcctggcgcagttgcaccagttgcgcgggcgcgtgggccgcagccaccaccaggcatat
gcctacctcatggtgccggacatcgaaggcctgaccaagcaggccgcgcaacgcctggac
gccattcagcagatggaagaactcggcagcggcttctacctcgccatgcacgacctggag
attcgcggcgcgggcgaggtgctcggcgagaaccagagcggcaacatgctggaggtgggc
ttccagctctacaacgagatgctgagcgaagccgtggcctcgctcaaggccggacgcgaa
cccgacctgctcgcgccgctctccgtcaccaccgacatcaaccttcacgcgcccgcgctg
ctgcccaacgactactgcggcgacgtgcacctgcgcctgtcgttctacaagaaactggcc
acggcgaagaacaccgaccaggtcgacgcactgctggaagaaatcgtcgaccgcttcggc
aagctgccgccgcaggcacagacgctgatcgacgtgcaccgcctgcgctgcatcagcatg
ccctacggcgtggtgaaggtggatgcggcgcccggggtgacgaacatcaccttcaaggcc
aacccgccgttcgagccgatgcgcatcatcgagatgatccagaagaacaagcacatcaag
ctggcgggcaacgacaagctgcgcatcgaacgccccctgcccgaggtgaaagaccgcgtg
cagatggtgcgcgacgtgttgcgctcgctcggccagccggtgccgacgccaacgcccgcc
atggcacggtag
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integrated database retrieval system
