Hydrogenophaga sp. BPS33: F9K07_18435
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Entry
F9K07_18435 CDS
T06379
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F9K07_18435 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_18435 (ligD)
Enzymes [BR:
hyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F9K07_18435 (ligD)
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F9K07_18435 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHE86734
UniProt:
A0A6P1IY85
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All DBs
Position
complement(3969396..3971834)
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AA seq
812 aa
AA seq
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MADTLERYRKKRNFALTPEPASGGEASPGALRYVIQKHWASHLHYDLRLELDGTMKSWAV
PKGPSLDPADKRMAVQVEDHPIAYNTFEGQIPAGQYGAGKVIVWDKGHWSPLGDAAKGYR
EGRLKFELHGHKLQGRWTLVRMNGKADEKSPPWLLIKEHDAHERPASRFNVVEAMPDSVG
HLPGVSEAPARTRKPAAEKPTARKAALPEALSPQLATLVDAPPADAAHWLWELKFDGYRL
LARVQRGQVRLFTRNGHDWTSRMPDLAATLRRFPLKSAWIDGEVLALDGEGVPSFQALQN
AFESASTAQGLVFYAFDLPFADGEDLRGLPLVERRARLQRVLGPSNDAQVRFSADFDAPP
ADLMVSACQIGFEGLIGKRKDAPYVSRRNADWIKLKCQLRQEFVIGGFTDPQGSRSGIGS
LLLGVHDDDGGGALRYVGNVGSGFSERTLNTLHAKLLKLQAERAPFAESDRIERRAHWVR
PRLLAEVSFAGWTREGRLRHAVFHGLRTDKPATDIVQERPLPVNTMKLSNPERVIDADSG
LTKLDLARYYDKVAPLMMAHLKARPVALVRAPDGVQGEKFFQKHLDKTELEGVRLLDPSL
DEGHAPLIEVASAQGLRSASQMNVVEYHTWNARKDRIERPDRITFDLDPGEGVAWEQVQE
AAQLVRALLDELALPSFLKTSGGKGLHVVVPIKRLHGWDEVKGFSQRVVQHLAAHIPARF
VAKSGPRNRVGKIFVDYLRNGRGATTVAAWSARARPGMGISVPVAWSELGKLTGGAHWTV
RSVDERLRKGNAPWEGYDKAAVSLGKAMRLLA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacactcgagcgctaccgcaagaagcgcaacttcgcgctcacgccggaaccg
gcgtcgggcggtgaggcatcgcccggggcgttgcgctatgtgatccagaaacactgggcc
agccatctgcactacgacctgcgccttgaactcgacgggaccatgaagagctgggcggtg
cccaaggggccgagcctggacccggcggacaagcgcatggccgtgcaggtggaggaccat
cccatcgcctacaacaccttcgaggggcagatcccggcgggccagtacggcgcgggcaaa
gtgatcgtgtgggacaaggggcactggtcaccgctgggcgacgcggccaaaggctaccgc
gagggccggctcaagttcgagttgcacggccacaagctgcaggggcgctggaccttggtg
cgcatgaacggcaaggcggacgagaagtcgccaccgtggctgctgatcaaggagcacgat
gcgcacgaacggccggccagccgcttcaacgtggtcgaggcgatgcccgacagcgtgggc
catctgcccggggtttccgaggccccggcacggacccgaaaacccgccgccgagaagccg
actgcgcgcaaggcggcattgcccgaagccttgtcgccgcagttggccactttggtcgat
gcgccgccggccgacgcggcgcattggctgtgggagctcaagttcgatggttaccgcctg
ctcgcgcgcgtacagcgtggccaggttcgtttgttcacccgcaatggccacgactggaca
tcgcgcatgcccgacctggccgccaccttgcgccgcttccccttgaagtcggcttggatc
gacggcgaagtgctggcgctggacggcgagggcgtcccgagttttcaggcgctgcaaaac
gcctttgagagcgcgtccacggcgcaaggcctggtgttctacgcgttcgatctgcccttt
gccgatggcgaagatctgcgcggcctgccgctggtggaacggcgtgcgcgcttgcagcgc
gtgctcggtccatccaacgatgcgcaggtgcgcttcagcgccgacttcgatgcgccgccc
gccgatctgatggtgtcggcctgccagatcggcttcgaaggactgatcggcaaacgcaag
gacgcaccctacgtgtcgcgccgcaacgcggactggatcaagctcaagtgccagctgcgc
caggagttcgtgatcggcggcttcaccgacccgcaaggctcgcgcagcggcattggatcc
ttgttgctcggcgtgcacgacgacgacggaggtggtgcattgcgctacgtgggcaacgtg
ggctcgggcttcagcgaacgcacgctcaacaccctgcatgcgaagctgctcaagctccag
gccgagcgcgcaccgtttgccgagtccgaccgcatcgaacgccgggcgcattgggtaagg
ccgcgtctgctggcggaagtgtcgtttgccggttggacgcgcgaaggccgtttgcgccac
gcggtctttcacggcctgcgcaccgacaagcccgccaccgacatcgttcaggaaaggccc
ctaccggtgaacaccatgaaactctccaaccccgagcgcgtgatcgatgccgacagcggg
ctcaccaagctggacctcgcgcgctactacgacaaggtcgcgccgctgatgatggcgcat
ctcaaggcgcgcccggtggcactggtgcgcgcgcccgatggcgtgcaaggggagaaattc
ttccagaagcacctggacaagacggagctcgaaggggtgcggctgctggacccgtcgctc
gacgaaggccacgcgccgctgatcgaagtggccagcgcgcagggcctgcgttcggcctcg
cagatgaacgtggtggagtaccacacctggaacgcgcgcaaggaccgaatcgaacgcccg
gaccgcatcaccttcgacctcgacccgggcgagggcgtggcctgggagcaggtgcaggaa
gcggcgcaactggtgcgtgcgctgctcgacgaactggcattgcccagcttcctcaagacc
agcggcggcaagggcctgcatgtggtggtgcccatcaagcgcctgcacggctgggacgag
gtgaagggtttttcgcagcgggtggtgcagcacctggcggcgcacatacccgcgcgtttc
gtggccaagagcgggccgcgcaaccgcgtgggcaagatcttcgtggactacctgcgcaat
gggaggggcgcgaccacggtggccgcgtggtcggcgcgcgcgcgtccgggcatgggcatt
tcggtgccggtggcgtggtcggagctgggcaaactcactggcggcgcgcattggacggtg
cgcagcgtggacgagcgcttgcgcaagggcaatgcgccatgggagggatacgacaaggcg
gcggtgtcgctgggcaaggccatgcgcttgttggcttga
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