KEGG   Hydrogenophaga sp. BPS33: F9K07_18435
Entry
F9K07_18435       CDS       T06379                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hyn  Hydrogenophaga sp. BPS33
Pathway
hyn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hyn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F9K07_18435 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hyn03400]
    F9K07_18435 (ligD)
Enzymes [BR:hyn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F9K07_18435 (ligD)
DNA repair and recombination proteins [BR:hyn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F9K07_18435 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QHE86734
UniProt: A0A6P1IY85
LinkDB
Position
complement(3969396..3971834)
AA seq 812 aa
MADTLERYRKKRNFALTPEPASGGEASPGALRYVIQKHWASHLHYDLRLELDGTMKSWAV
PKGPSLDPADKRMAVQVEDHPIAYNTFEGQIPAGQYGAGKVIVWDKGHWSPLGDAAKGYR
EGRLKFELHGHKLQGRWTLVRMNGKADEKSPPWLLIKEHDAHERPASRFNVVEAMPDSVG
HLPGVSEAPARTRKPAAEKPTARKAALPEALSPQLATLVDAPPADAAHWLWELKFDGYRL
LARVQRGQVRLFTRNGHDWTSRMPDLAATLRRFPLKSAWIDGEVLALDGEGVPSFQALQN
AFESASTAQGLVFYAFDLPFADGEDLRGLPLVERRARLQRVLGPSNDAQVRFSADFDAPP
ADLMVSACQIGFEGLIGKRKDAPYVSRRNADWIKLKCQLRQEFVIGGFTDPQGSRSGIGS
LLLGVHDDDGGGALRYVGNVGSGFSERTLNTLHAKLLKLQAERAPFAESDRIERRAHWVR
PRLLAEVSFAGWTREGRLRHAVFHGLRTDKPATDIVQERPLPVNTMKLSNPERVIDADSG
LTKLDLARYYDKVAPLMMAHLKARPVALVRAPDGVQGEKFFQKHLDKTELEGVRLLDPSL
DEGHAPLIEVASAQGLRSASQMNVVEYHTWNARKDRIERPDRITFDLDPGEGVAWEQVQE
AAQLVRALLDELALPSFLKTSGGKGLHVVVPIKRLHGWDEVKGFSQRVVQHLAAHIPARF
VAKSGPRNRVGKIFVDYLRNGRGATTVAAWSARARPGMGISVPVAWSELGKLTGGAHWTV
RSVDERLRKGNAPWEGYDKAAVSLGKAMRLLA
NT seq 2439 nt   +upstreamnt  +downstreamnt
atggccgacacactcgagcgctaccgcaagaagcgcaacttcgcgctcacgccggaaccg
gcgtcgggcggtgaggcatcgcccggggcgttgcgctatgtgatccagaaacactgggcc
agccatctgcactacgacctgcgccttgaactcgacgggaccatgaagagctgggcggtg
cccaaggggccgagcctggacccggcggacaagcgcatggccgtgcaggtggaggaccat
cccatcgcctacaacaccttcgaggggcagatcccggcgggccagtacggcgcgggcaaa
gtgatcgtgtgggacaaggggcactggtcaccgctgggcgacgcggccaaaggctaccgc
gagggccggctcaagttcgagttgcacggccacaagctgcaggggcgctggaccttggtg
cgcatgaacggcaaggcggacgagaagtcgccaccgtggctgctgatcaaggagcacgat
gcgcacgaacggccggccagccgcttcaacgtggtcgaggcgatgcccgacagcgtgggc
catctgcccggggtttccgaggccccggcacggacccgaaaacccgccgccgagaagccg
actgcgcgcaaggcggcattgcccgaagccttgtcgccgcagttggccactttggtcgat
gcgccgccggccgacgcggcgcattggctgtgggagctcaagttcgatggttaccgcctg
ctcgcgcgcgtacagcgtggccaggttcgtttgttcacccgcaatggccacgactggaca
tcgcgcatgcccgacctggccgccaccttgcgccgcttccccttgaagtcggcttggatc
gacggcgaagtgctggcgctggacggcgagggcgtcccgagttttcaggcgctgcaaaac
gcctttgagagcgcgtccacggcgcaaggcctggtgttctacgcgttcgatctgcccttt
gccgatggcgaagatctgcgcggcctgccgctggtggaacggcgtgcgcgcttgcagcgc
gtgctcggtccatccaacgatgcgcaggtgcgcttcagcgccgacttcgatgcgccgccc
gccgatctgatggtgtcggcctgccagatcggcttcgaaggactgatcggcaaacgcaag
gacgcaccctacgtgtcgcgccgcaacgcggactggatcaagctcaagtgccagctgcgc
caggagttcgtgatcggcggcttcaccgacccgcaaggctcgcgcagcggcattggatcc
ttgttgctcggcgtgcacgacgacgacggaggtggtgcattgcgctacgtgggcaacgtg
ggctcgggcttcagcgaacgcacgctcaacaccctgcatgcgaagctgctcaagctccag
gccgagcgcgcaccgtttgccgagtccgaccgcatcgaacgccgggcgcattgggtaagg
ccgcgtctgctggcggaagtgtcgtttgccggttggacgcgcgaaggccgtttgcgccac
gcggtctttcacggcctgcgcaccgacaagcccgccaccgacatcgttcaggaaaggccc
ctaccggtgaacaccatgaaactctccaaccccgagcgcgtgatcgatgccgacagcggg
ctcaccaagctggacctcgcgcgctactacgacaaggtcgcgccgctgatgatggcgcat
ctcaaggcgcgcccggtggcactggtgcgcgcgcccgatggcgtgcaaggggagaaattc
ttccagaagcacctggacaagacggagctcgaaggggtgcggctgctggacccgtcgctc
gacgaaggccacgcgccgctgatcgaagtggccagcgcgcagggcctgcgttcggcctcg
cagatgaacgtggtggagtaccacacctggaacgcgcgcaaggaccgaatcgaacgcccg
gaccgcatcaccttcgacctcgacccgggcgagggcgtggcctgggagcaggtgcaggaa
gcggcgcaactggtgcgtgcgctgctcgacgaactggcattgcccagcttcctcaagacc
agcggcggcaagggcctgcatgtggtggtgcccatcaagcgcctgcacggctgggacgag
gtgaagggtttttcgcagcgggtggtgcagcacctggcggcgcacatacccgcgcgtttc
gtggccaagagcgggccgcgcaaccgcgtgggcaagatcttcgtggactacctgcgcaat
gggaggggcgcgaccacggtggccgcgtggtcggcgcgcgcgcgtccgggcatgggcatt
tcggtgccggtggcgtggtcggagctgggcaaactcactggcggcgcgcattggacggtg
cgcagcgtggacgagcgcttgcgcaagggcaatgcgccatgggagggatacgacaaggcg
gcggtgtcgctgggcaaggccatgcgcttgttggcttga

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