Hydrogenophaga sp. RAC07: BSY239_1975
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Entry
BSY239_1975 CDS
T04455
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSY239_1975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyr03400
]
BSY239_1975 (mfd)
Enzymes [BR:
hyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSY239_1975 (mfd)
DNA repair and recombination proteins [BR:
hyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSY239_1975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOF85908
UniProt:
A0A1B3LYH6
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All DBs
Position
2091792..2095292
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AA seq
1166 aa
AA seq
DB search
METPPVMDLPKLSPGKRFTLPHPGGSADALLLAKLAARDKAAGRLTAIITSDANDAQRLI
EEMAFFAPELRCALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLVPAT
TALYRVAPPAFLAGYTFQFKVKQKLDEARLKSQLTLAGYQHVTQVVSPGEYAVRGGLIDL
FPMGSLVPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDGARAKFRSRW
RELLDGDPTKSRIYKDMGNGVATAGIEYYLPLFFDDTATVFDYLGADATVVLHGDLEPAF
QRFWQDTKDRYRLVHGDPERPVLPPDSLFLSVEQFYARANAHAQLSVRPVQAEQEHSAFA
QKLGDLSVVRGAEDPLSRLQGHIRNTAQRVLLLAESDGRRESLLDFLRASGVSPPAFDSL
LEFQTSSEKLGIATAALSTGFSWLEDGIDFVTETELFAAGPTTRRRKKQEQVSDVDALIK
DLSELNLGDPVVHIAHGIGRYRGLINLDMGEKNADGTPALMEFLHLEYADKAVLYVPVSQ
LQLIGRYTGVSADEAPLHRLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRY
SAQDYEVFANDFGFEETADQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVA
VTGGRQVALLAPTTLLAEQHYQTLVDRFAKWPVKIAEMSRFRSAKEITLAAKGLADGSVD
IVVGTHKLLSESVKFKDLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGM
ALEGLRDLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVDTIENR
RQKLEEILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVM
ARADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAAQRLDAIQQMEELGSGFYL
AMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVRSLKAGREPDLLSPLSVTTDIN
LHAPALLPSDYCGDVHLRLSFYKKLATAQTTDQVDGLLEEIVDRFGKLPPQAQTLVDVHR
LRVLSAPYGVVKVDAAPGVIQITFRPNPPFDSMRIIELIQKNRHIKLAGNEKLRIERALP
EVKDRVQLVRDVLRSLGQPTQQPTTV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaccgcccgtcatggacctccccaaactctcccccggcaaacgcttcaccctg
ccccaccccggcggttcggccgacgcgttgctgctggccaaactcgccgcacgcgacaag
gccgcaggacgtctcacggcgatcatcacgtcggacgccaacgacgcgcagcgactcatt
gaagaaatggcgttcttcgcgcccgagctgcgctgcgcgctgtttcccgactgggagacc
ctgccctacgacaccttctcgccgcaccaggacctgatcagcgaacggctggccacgctg
tggcgcatctcccagcgggacaaggacaccggcgccgacgtggtgctggtgccggccacc
accgcgctgtaccgcgtggcgccgccggcgtttctggctggctacaccttccagttcaag
gtcaagcaaaagctggacgaagcacgcctgaaaagccagctcacgctcgcgggctaccag
cacgtgacccaggtggtgagcccgggcgagtacgcggtgcgcggcggtttgatcgacctc
ttccccatgggcagcctggtgccctaccgcgtggacctgttcgacgacgagatcgacagc
atccgcaccttcgaccccgacagccagcgcagcctgtacccagtgcccgaggtgcggctg
ctgcccgggcgcgagttccccatggacgatggtgcgcgcgccaaattccgcagccgctgg
cgcgaactgctcgatggcgaccccaccaagagccgcatctacaaggacatgggcaacggc
gtggccaccgccggcatcgagtactacctgcccctgttcttcgacgacacggccacggtg
ttcgactacctcggtgccgacgccacggtggtgttgcacggcgatctggaaccggccttc
cagcgtttctggcaagacaccaaagaccgctaccgcctggtgcatggcgacccggaacgc
ccggtgttgccgcccgattcgctgttcctgagcgtggagcagttttatgcgcgggccaac
gcgcatgcgcagctctcggtgcgcccggtgcaggccgagcaggagcacagcgctttcgcg
cagaagctgggcgacctctcggtggtgcgcggcgccgaagacccgctctcgcgcctgcaa
ggccacatccgcaacaccgcgcaacgcgtgctgctgctggccgagagcgatggccggcgc
gagagcctgctcgacttcttgcgtgccagcggcgtcagtccgccagccttcgattcgctg
ctcgagtttcagaccagcagcgaaaagctgggcatcgccaccgctgcgctctccaccggt
ttctcgtggctcgaagacggcatcgacttcgtcaccgaaaccgagctcttcgcggccggc
cccaccacgcgtcggcgcaagaaacaggaacaggtcagcgacgtcgatgcgctgatcaag
gacctctcggagctcaacctgggcgacccggtggttcacatcgcccacggcatcgggcgc
taccgcggcctgatcaacctggacatgggcgagaaaaacgccgacggcacgccagcgctg
atggagttcctgcacctcgagtacgccgacaaggccgtgctctacgtgccggtgagccag
ctgcaattgatcggccgctacaccggcgtgagcgccgatgaggcgcctttgcaccgcctg
ggcagcggccagtgggagaaggccaagcgcaaggcggccgagcaggtgcgcgatgcggcg
gccgagttgctcaacatctacgcgcgccgcgccgcgcgccagggccacgccttccgctac
tccgcgcaggactacgaggtgttcgccaacgacttcggcttcgaggaaaccgcggaccag
cgcgcggccatccacgccgtgatccaggacatgatcagcccgcgcccgatggaccggctg
gtgtgcggcgacgtgggtttcggcaagaccgaagtcgccctgcgcgcggccttcgtggcg
gtgaccggtgggcgtcaggtggccctgctggcacccaccacgctgctcgccgaacagcac
taccagacgctggtggaccgctttgccaagtggccggtgaagatcgccgagatgagccgc
tttcgctcggcaaaagagatcaccctggcagcgaaaggcctggccgacggttcggtggac
atcgtggtcggcacacacaagctgctgagcgaaagtgtgaagttcaaggacctgggcctg
ctcatcatcgacgaggaacaccgcttcggcgtgcgccacaaggaacagatgaaggcgctg
cgcgccgaggtggatgtgctcacgctgaccgccacgccgatcccgcgcacgctgggcatg
gcgctcgaaggcctgcgcgatctgagcgtgatcgccaccgcgccgcagcgccgtctggcc
atcaagaccttcgtgcgcaacgaaggcaacggcgtgatccgcgaagcggtgctgcgcgag
ctcaagcgcggcgggcaggtgtactttctgcacaacgaggtcgacaccatcgagaaccgc
cggcagaagctcgaagaaatattgcccgaggcacgcattgccattgcccacggccagatg
cccgagcgcgagctggagcgcgtgatgcgcgactttgtggcgcagcgcttcaacgtgctg
ctgtgctccaccatcatcgaaaccggcatcgacgtgcccaccgccaacaccatcgtgatg
gcgcgcgccgacaagttcggtctggcgcagctgcaccagctgcgcggacgcgtgggccgc
agccaccaccaggcttatgcctacctcatggtccccgacatcgagggtctgaccaaacag
gccgcccagcgcctggacgcgatccagcagatggaagagctcggcagcggcttctatctg
gccatgcacgacctcgagatccgaggtgccggcgaggtgctgggcgagaaccagagcggc
aacatgctcgaagtcggcttccagctctacaacgagatgctgagtgaagccgtgcgttca
ctcaaagccggccgcgaacccgacctgctctcgccgctctcggtcacgaccgacatcaac
ctgcatgcgcccgccctgctgcccagcgactactgcggcgacgtgcacctgcgcctctcg
ttctacaagaagctcgccaccgcgcagaccaccgaccaggtggacggcttgctcgaagag
atcgtggaccgcttcggcaaactgccgccccaggcgcagacgctggtggacgtgcaccgc
ctgcgtgttctcagcgcaccttacggcgtggtgaaggtggacgcggcacccggtgtgatc
cagatcaccttccgccccaacccgccgtttgactccatgcgcatcatcgaactgatccag
aagaaccgccacatcaaactcgccggcaacgagaagctgcgcatcgagcgcgcactgccc
gaagtgaaggatcgcgtgcagctggtgcgcgacgtgctgcgttcgctcggccaaccgaca
caacaacccaccaccgtttga
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