Idiomarina abyssalis: K5X84_05025
Help
Entry
K5X84_05025 CDS
T07548
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K5X84_05025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iab03400
]
K5X84_05025 (mfd)
Enzymes [BR:
iab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5X84_05025 (mfd)
DNA repair and recombination proteins [BR:
iab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K5X84_05025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QZN91863
LinkDB
All DBs
Position
complement(1064544..1068026)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTKASVLRPPFPPAANKDLTWQELHGSAPALAIAKLIDATPGRVLIVTADANQAYRLEQE
IKYFAGEHTEYHDDITLFPDWETLPYDSFSPHQDIISDRLRVLARLPEAKRGALIVSINT
LLHRIAPTSFVQGQALQIEKGQQLDSLKLRQQLENAGYRHVNQVMEHGEFSARGSILDLY
PMGSQTPYRLDFFDDEVDSIRPFDPETQLSKDPIEGINLLPAHEFPLTKTAIERFRANYR
EHFEASTERESVYQQVSKGQLPGGIEYYLPLFFEETASLFDYLPDDTVLVTFGNIQASLE
RLWQDINHRYDQRQFDPLRPLLHPNELFLPVDNIHAGFKQYRRVRANVPAEMAQPGPTPF
LTEAVTEIAADHQQKQPFAKLKTKLEQALANNDKVLLSAESAGRREALREIVSKLGFPVT
LCSGLEECPTKQVGLIISPIINSFYLPDAKLWFITETELFGNRVVQSRRRQQKATVSADT
LIRNLAELQAGQPVVHLDHGVGRYQGLTTLDAGNVTTEFVTIEYAGGAKLYVPVANLNVL
SRYSGGEESHAPLNKLGNDSWEKAKKRAAEKVRDVAAELLDIYARREAKPGYAFNINEED
YQRFAAGFPFEETIDQQAAIDAVKQDMQQPRAMDRLVCGDVGFGKTEVAMRAAFIAVNEG
KQVMVLVPTTLLAQQHYENFSDRFADQAIRVEVLSRFKTAKQSKGILEDLSNGKVDIVIG
THKLLQDNVKCHDLGLLIVDEEHRFGVRQKDTIKRLRADVDILTLTATPIPRTLNMAMNN
IRDLSIIATPPAKRLAVKTFVREYDEPTVREAILREILRGGQVYFLHNNVDTIEKTAADI
ETLVPEARVVVAHGQMRERDLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRAD
HLGLAQMHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAHKRLEAISQLEDLGAGFMLATHD
LEIRGAGELLGDDQSGQIESIGFTLYMDMLEQAVKALKEGKEPALAQLLHERAEIDLKLP
ALLPEAYIPDVNNRLSLYKRIANCETSKELDDLQVELIDRFGLLPDAAKNLMRQTQLRNN
AEHLGIRKIDIGNQGGIIEFADDTKINPEIIIGLIQKAPNYYKLDGPNRLRLSQSLEDTQ
SRLKLVESLLEEFAEQSQAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggcatctgtattaagaccccctttcccaccggcagcgaataaagatctcacc
tggcaggaactgcacggcagtgcccctgcactggccattgctaagctaattgatgcgact
ccggggcgggtgctaattgttactgcagatgctaaccaggcctaccgattagaacaggaa
attaaatattttgccggtgaacacaccgagtatcatgacgacataacgcttttccctgac
tgggaaacgctgccttacgacagcttttctccgcatcaggacattatatctgatcgtttg
cgtgtgttagcacgccttccggaagctaagcgtggcgcactgattgtcagtattaatacc
ttgctccaccgcattgcaccaacgtcttttgttcagggtcaagcactacaaattgagaaa
ggccagcaactcgacagcttgaagctgcggcagcaattggaaaatgcaggttaccgccac
gtaaaccaggttatggaacatggtgaattcagcgcccgggggtcaatcttggacctttat
cctatgggcagccagaccccataccggctcgattttttcgatgacgaagttgatagtatc
aggccttttgacccggaaactcagctatcgaaagaccctatagagggcattaatttactg
cccgcgcacgagttcccgttaaccaaaacggcaattgaacgcttccgcgcaaactaccgc
gaacactttgaagcaagtactgaacgcgaatcggtctatcagcaagtcagtaagggtcag
ttacccggcgggattgaatactatctcccactattttttgaagaaacagcaagcttattt
gattatcttccggacgacaccgtactggttaccttcggcaatattcaggcaagcctggag
cgcctctggcaggatattaatcatcgctacgatcaacgccagtttgatccgttacggcca
ttgttacaccctaatgaactgtttcttccggtcgataatattcacgctggtttcaagcag
taccgtcgagtgcgagccaacgtaccggcagaaatggcacaacccgggccgacaccgttt
ctgacagaagccgttacagaaatagctgcggatcaccagcaaaaacagccttttgccaaa
ctgaaaaccaaattagaacaggcgttagcaaataacgacaaggttctgctttccgctgag
agcgcaggccgtcgtgaagctctgcgtgaaattgtcagcaagctcggttttccggttacg
ctttgctcaggtcttgaagagtgtccgaccaaacaagtcggcttaattatcagccccatt
attaactcgttttatttacccgatgccaaactctggtttattaccgaaactgaactgttt
ggtaaccgcgtggtacaaagccgccgacgccagcaaaaagccactgtcagcgccgatacg
ctcattcgcaatttagcagaactgcaggccggtcagccggttgttcacctggaccacggc
gttggccgctatcaggggttgacgactctcgatgccggtaatgtcaccacggaatttgtc
accattgagtacgcaggtggcgccaaactttatgttccggtcgctaacctgaatgtttta
agccgctacagtggcggtgaagaaagccatgcacctttaaataaactgggtaatgacagt
tgggaaaaagccaaaaaacgtgctgcagaaaaagtgcgagacgttgcggctgaactgctc
gatatttacgcccgtcgtgaagctaagcccggctatgcatttaatattaacgaagaagac
taccaacgttttgccgccggctttccgtttgaagaaaccattgaccagcaggccgcaatt
gatgctgtgaaacaggatatgcaacagccacgggcaatggaccggttggtatgcggcgac
gtgggctttggtaaaaccgaagtggccatgcgcgcggcctttattgccgttaatgaaggt
aaacaagtgatggtgctggttccaaccaccctgctggcccagcaacattatgagaacttt
agcgaccgttttgctgatcaggccattcgggttgaagtgctctcacgctttaaaaccgca
aaacagtcgaaaggcattcttgaagatttatctaacggcaaagtcgatattgttattggt
acgcacaagttactgcaagacaatgttaagtgtcatgacttaggtctgctcattgtcgac
gaagaacatcgctttggtgtaagacaaaaagacacgattaaacgcctgcgcgctgacgta
gatattctgacgctaacagctacgcctattccacgtaccctgaatatggccatgaacaac
attcgtgacctgtcaattatagccacgccaccagctaagcgactggcagtaaaaaccttt
gtccgcgaatacgacgagccaacggttcgggaagccatattacgtgagattctgcgcggt
ggtcaggtttatttcttacacaataatgtcgacactattgaaaaaaccgcggccgatatt
gaaaccctggttccggaagcccgtgttgtggttgctcacggacaaatgcgtgagcgtgat
ctggaacgcatcatgtcggacttctatcatcagcgctttaatgtgctggtttgtaccacc
attattgaaaccggtatcgatatacccagcgccaacaccattattatggacagggctgat
cacctgggtctggcacagatgcaccagctgcggggccgcgttggacgctcccatcatcag
gcttatgcgtacttattgacgccacaccccaaacgcatgaccaaagacgcacacaagcgc
ctcgaagccatttctcagcttgaagatctgggcgcgggctttatgctcgcaactcacgac
ttagaaattcgtggtgccggtgagctacttggagacgatcaaagcggccaaattgaaagc
attggttttactctatacatggacatgctggagcaagcggttaaagccttaaaagaaggt
aaagaacccgctcttgcgcaactgctgcatgaacgtgctgagattgacttaaaacttccg
gcgcttttacctgaagcttacataccagacgttaataaccgtttaagcttgtacaaacga
atagccaactgtgaaaccagtaaagaactggatgatttgcaggtggaattaattgaccgt
tttgggctacttccggacgcagccaagaacttgatgcgccaaacacaactgcgtaataat
gccgagcatttgggtatccgtaaaattgatattggtaatcagggcggcattattgagttt
gccgacgatacaaaaattaacccggaaattattatagggttgattcaaaaagcgcccaat
tactacaaactggatggcccgaaccgtttacgtttaagtcagtcactggaagatactcaa
agtcggttaaaactggtagagtctctgttagaagagtttgcagaacaatctcaggcggcg
taa
DBGET
integrated database retrieval system
