Ignavibacterium album: IALB_0015
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Entry
IALB_0015 CDS
T01943
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ial
Ignavibacterium album
Pathway
ial03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ial00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IALB_0015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ial03400
]
IALB_0015 (mfd)
Enzymes [BR:
ial01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IALB_0015 (mfd)
DNA repair and recombination proteins [BR:
ial03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IALB_0015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
AAA_22
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFH47729
UniProt:
I0AFH2
LinkDB
All DBs
Position
20936..24316
Genome browser
AA seq
1126 aa
AA seq
DB search
MSEQKETISIQAVEKIVNALKSVSQEINVSPLHGSSRAIVVSEIKKLSRQVIVLVPEIKV
VDETFVELSLINPKQNLIVIKDFDLESVQGKLSDILKSEDFILISTYQLLNLGLPTKEKI
NKTSTKITVGGEITYTELIEYLNLINYTRDKFVEAPGYFSVRGSIIDFWSYSEKNPTRLE
FDGDFIESIRYFDPESQRSTAKIEETTLSASINDIKDEEFTTIFSYLNNPLVFATEQDLS
NLNKAVEKFITVEEYSDDIDFDDELSEIKSSEQKEHLNVDNTYHKVKFELQNTSAKWIIE
KNFSSPERIELGIIPAPSIHSNFELLFNTIKEFSNKKFNVIVTSENELQTERLKDLFIEY
NEELSLLIEKKDVEIITLPIKEGFISAEDKILVLTDYQIFNKPYRTKIPSVKRIKKSKAA
TLGSIKKGDFVVHEDYGIGKYAGLETIKIGDAQQESMKILYAEGGVVYVNLNYLSLVKKY
SAGDSEGKLQPTLSKLGTPEWQNTKARAKRKIKEAARELIELYARRKASKGFSFSDDTIW
QKELEASFFYEDTPDQARATEEIKQDMQSENPMDRLVCGDVGFGKTEVAVRAAFKAVQDG
KQVAVLVPTTILAEQHFNTFSDRLSQFPVRIAVLSRFQSKAKQKEIVQLLEEGKIDIIIG
THRLLSKDVKFKDLGLLIIDEEHRFGVTAKEKLRQIRVNIDTLTLTATPIPRTLNLSLLG
ARDLSIIATPPPNRQPIYTSVSVFNIQKIREWILREVSRNGQVYFVHDRVQSIGKLAEYL
QRNIPEIKIGIAHGQLTPSKLEEVIHNFLNKKFDVLISTKIIESGIDIPNVNTIIVNRAD
RFGLAELHQLRGRVGRSDRQAYAYFIVPSLTGITKKALRRLQAIEEFTEIGSGFNLSMRD
LEIRGAGNLLGKEQTGFIDEIGFDLYIKLINEAVEELKYEEFKEVFKSLPKPKERTEPTI
DTYFEIGIPEEYMPDQSERLNFYTTLYSVQSQQEIDDLKEEMTDRFGDYPEIVNRLIKTA
TLRFYASYALFDWIVIQRKNISIILPKGDKEDYYEVRFIELMRFILDEYKNEYKFVQQKD
VMKLVKENKSVKPEDVLNELIDFSKRVIKLFGNEIGEEVSNSVYEK
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacagaaagaaacgatttcaattcaggcggttgaaaaaattgtcaatgctctt
aaatcagtttctcaggaaatcaatgtcagtccgttgcatggatcatccagagctattgtt
gtttcggaaataaaaaagttatctcgacaggttattgttctcgttccggaaattaaagtt
gttgatgaaacttttgttgaactgtcacttatcaacccaaagcagaatttaatcgtaatc
aaagacttcgatttagagtcagttcagggaaaattgtctgatattctcaaatctgaagac
ttcatacttatatcgacctatcaacttcttaatcttggccttccgacaaaagaaaaaata
aataaaacatcgactaaaattactgttggcggagaaattacttatactgagctgattgag
tatctgaacctgataaattatactcgtgataaatttgtagaagctccgggatatttttcg
gttcggggttcaataattgatttctggtcatattcagaaaaaaatccaacaagattggaa
tttgatggtgactttatagaatcaatcagatatttcgatcccgaatcgcaacgatcaaca
gccaaaatagaagaaacaaccttatccgcatcgattaatgatataaaagatgaagagttt
acaacgattttttcttatttgaataatcctcttgtttttgctactgagcaggatttgtca
aaccttaataaagcagttgaaaaatttataacagtggaagagtattcagatgatatagat
tttgatgatgaactttccgaaataaaatcttcagaacaaaaggagcatctcaatgttgat
aacacatatcataaagttaaatttgaattgcaaaatacttctgcaaaatggataatcgaa
aagaatttttcatcaccggaaagaatagaacttggaataatacctgcaccatcaattcat
tctaattttgaattactctttaatacaattaaggaattttcgaataaaaaatttaatgtg
atagtaacttctgaaaatgagctgcaaaccgaaagattaaaggatttgttcattgaatac
aatgaagaattatctttactaattgagaaaaaagatgttgaaatcatcacgcttccgata
aaggaaggatttatttcagcagaagataaaattttagtattaactgattatcagattttt
aataaaccataccgaacaaaaattccaagtgtaaagagaataaagaaatctaaggcagca
actcttggctctataaagaaaggtgattttgttgttcacgaagattatggaattggaaag
tacgccggacttgaaacaatcaagataggtgatgcacaacaggaatcaatgaagatttta
tatgctgaaggtggtgttgtttatgttaatctgaactatctctcgttggtaaaaaaatat
tctgcaggcgattcagaagggaagttgcagccaactctttcgaaacttggtacaccagaa
tggcagaatacaaaagcacgtgcaaagagaaaaattaaagaagcagcaagagaactgatt
gaactttatgcaagaagaaaagcctcaaaaggattttctttcagtgatgatacaatatgg
cagaaagaacttgaagcatccttcttttatgaagacacacccgatcaggcaagagctacc
gaagaaattaaacaggatatgcaaagcgaaaatccaatggatagacttgtttgtggtgat
gtaggttttggtaaaactgaagttgcggtgcgcgctgcattcaaagctgtgcaggacggc
aagcaggttgccgttttagttccaactacaattttagccgaacagcattttaatactttt
tcggaccgcttatctcagtttccggttagaattgctgtgctatcgagatttcagtcgaaa
gcaaaacagaaagaaatagtacaactgcttgaagaaggaaagattgatataatcattgga
acacatcgccttctttcaaaagatgtaaaatttaaagatctcggattgcttatcattgat
gaagaacatcggtttggtgtcacggctaaagaaaaactcagacagataagagtaaacatt
gatacacttactttaacagccacacctattccaagaacacttaatctttctttgcttggt
gcaagagatttatcaattattgcaacaccaccaccgaatcgccaaccaatttatacaagc
gtctccgtgtttaatattcagaaaataagagaatggatacttcgagaagtaagcagaaat
ggtcaggtttattttgtacacgacagagtgcagtcaataggaaaactagcagaatatctt
caaagaaatattcctgaaataaaaatcggaatcgcacacggacaactgacgccttcaaaa
cttgaagaagttattcacaattttcttaataaaaagttcgatgtacttatttcaacaaaa
attattgaatcaggaattgatattccgaatgtgaacacgataattgtaaaccgtgctgat
agatttggtcttgcagagcttcatcagttgagaggaagagtcggacgaagcgatcgacaa
gcttatgcatattttatcgttccttctttaacaggaataactaagaaggcattaagaaga
cttcaggcaattgaggaatttacagaaataggttcgggttttaatctttctatgcgggat
ctagaaataagaggcgcaggaaatttactcggaaaagagcaaacaggttttatcgatgaa
ataggatttgatttatatatcaaacttataaatgaagcagttgaagaattgaaatacgaa
gaattcaaagaagtgttcaaatcacttccgaaaccaaaggaaagaacagaacccacaatt
gatacttactttgagattggaattccggaagaatatatgcctgaccaaagcgaaagatta
aacttctatacgacattatattcagttcaatcgcagcaggaaattgatgatttgaaagaa
gaaatgacagatcgttttggtgattatcctgaaattgtaaataggcttataaaaacagcg
actctaagattttatgcatcttatgctttgtttgattggattgttatacaaagaaaaaat
attagtataattcttccaaaaggtgataaggaagattattatgaagttagatttattgag
cttatgagatttattcttgatgaatataagaatgaatataaatttgtgcaacaaaaagat
gtgatgaaacttgtgaaagaaaacaaatcagtaaaaccagaagatgtgttgaatgaattg
attgattttagtaaaagagtaattaaacttttcgggaatgagatcggtgaagaggtaagt
aatagtgtttatgaaaaataa
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