Iamia sp. SCSIO 61187: HC251_06470
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Entry
HC251_06470 CDS
T07394
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
iam
Iamia sp. SCSIO 61187
Pathway
iam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
iam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HC251_06470 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iam03400
]
HC251_06470 (mfd)
Enzymes [BR:
iam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HC251_06470 (mfd)
DNA repair and recombination proteins [BR:
iam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HC251_06470 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
dATP-dGTP_PPHyd
Motif
Other DBs
NCBI-ProteinID:
QYG95421
LinkDB
All DBs
Position
1316537..1319986
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AA seq
1149 aa
AA seq
DB search
MPVSTRTAAAPSPTAAAPLGDLPARLAAEPGLAGVRGRNRAHLAVTEAARPLTIAHLAGG
TRTPILVAVPTTGEAERLTHDLGAFLGRDKVELFPAWETLPFERVSPNVETMGHRMRVAW
RLRNPRQAPKVVVAPIRALVQRLGPHVDEVEPLIIRPGQQVDRDEVAAWLVAAGYRREPQ
VEARGEVAVRGSIVDVFPSTEDRPIRIDLWGDEVDRLTEFSITDQRSTDPVPAAAIFPCR
EVMPTAEVRARAEKLIATQPWGREQWERLAEGLVFDGMESWLPWLTDREHVLLDLLPTGE
DDGDAGALVLLVEPRRMRDRAEDIIGEESDLARHLARSTWDVPDSTDIPALHLPYDRLLS
HTTVPAWTVVNVADSPDTPVVQSIGWHPGVGDGAGLLGQVRDVVRSGVRVVGAADTEASA
GRMADVLRGQELEIEVRVAPLDRGVVLPGAGVAVLAEVDLTGRRRPHRAPRSRKRDTAGF
FDDLRPGSYVVHHQHGVARYGGMVTRTIGGVERDYLLLEYRGNDKLYVPSDQIDAVRHYT
GGEDPKPSRLGGGEWQKAKAKVRAEVSHIAQELVVLYQKRLSTPGYAYPEDTPWQREMEE
SFPHRETPDQLVAIEEVKADMQAERPMDRLVCGDVGFGKTEVALRAAFKAVQEGKQVAIL
VPTTLLAQQHFQTFSDRFSGYPVRVEVLSRFLTAGQAKEVMAGLRTGEVDLVVGTHRLLS
QDIEFKDLGLLVVDEEQRFGVKHKEQIKAIKANLDVLTLSATPIPRTLEMSLTGIRDLTL
LHTPPAERQPILTYVGEEDERAISEAIRRELLREGQVFFVHNRVRDIEKKAAELRDLVPE
ARIAVAHGQMDEGTLEQVVYDFWEGRFDVLVCTTIIESGIDMPTVNTLVVDRADRLGLGQ
LHQLRGRVGRAGQRAYAYLFHPRDMSLSEEAYERLKTIGEATELGSGFRIAMRDLEIRGA
GSLLGTGQSGHIAAVGYDLYVQMVSEAVAELKGEERREPAEVKLDLPLDAHLPSTYVPRE
DLRLEAYRRLATVTTPTEVDDIRAEWEDRYGPVPEPAAQLLEIARLRAECHRIGAREVNV
TKGPAFGGPAHTARVSPLVLKQSQQIRLRRLFPKAVYKEDQEQVVLPIPKTPTLAATLVD
LLRQLVPPE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgtgagcacccgcaccgctgccgccccgagccccaccgccgccgcccccctgggc
gacctgccggcgcggctggccgccgagccggggctggcgggcgtccgggggcggaaccgg
gcccacctggccgtgaccgaggcggctcgaccgctgaccatcgcccacctggccgggggc
acccggacgccgatcctcgtcgccgtgcccaccaccggcgaggccgagcggctgacccac
gacctgggcgccttcctcggccgggacaaggtcgagctgttcccggcgtgggagacgctg
ccgttcgagcgggtcagccccaacgtcgagaccatgggccaccgcatgcgggtggcgtgg
cgcctgcggaacccccgccaggcgcccaaggtggtcgtggcccccatccgggccctggtg
cagcggctgggcccgcacgtcgacgaggtcgagccgctgatcatccgtcccggccagcag
gtcgaccgggacgaggtcgccgcctggctggtggccgccggctaccgccgcgagccgcag
gtcgaggcccggggcgaggtggccgtgcgggggtcgatcgtcgacgtcttcccctcgacc
gaggaccgccccatccgcatcgacctgtggggcgacgaggtcgaccgcctgaccgagttc
tccatcaccgaccagcggtcgaccgacccggtgccggcggcggcgatcttcccgtgccgc
gaggtcatgcccaccgccgaggtccgggcgcgggccgagaagctgatcgccacgcagccg
tgggggcgcgagcagtgggagcggctggccgagggcctggtcttcgacggcatggagtcg
tggctgccgtggctcaccgaccgcgagcacgtgctgctcgacctgctccccaccggcgag
gacgacggagacgccggcgccctggtcctcctggtcgagccccggcgcatgcgggaccgg
gccgaggacatcatcggcgaggagtcggacctggcccggcacctggcccgcagcacctgg
gacgtccccgacagcaccgacatccccgccctccacctcccgtacgaccgcctgctctcg
catacgaccgtcccggcctggaccgtcgtcaacgtggccgactcgcccgacacgcccgtc
gtgcagagcatcgggtggcaccccggcgtcggtgacggcgccggcctgctcggccaggtc
cgggacgtggtccgcagcggcgtccgcgtcgtcggcgcagccgacaccgaggccagcgcc
ggccgcatggccgacgtcctccgcggccaggagctcgagatcgaggtccgggtggcgccg
ctcgaccgcggcgtcgtgctccccggcgctggggtcgcggtgctcgccgaggtcgacctc
accgggcgccgtcggccccaccgggccccgcgcagccgcaagcgcgacaccgccggcttc
ttcgacgacctgcgccccggctcctacgtcgtccaccaccagcacggcgtggcccgctac
ggcggcatggtcacccgcaccatcggcggggtcgagcgcgactacctcctgctcgagtac
cgggggaacgacaagctctacgtcccgtcggaccagatcgacgccgtccgccactacacc
ggcggcgaggacccgaagcccagccgcctcggcgggggcgagtggcagaaggccaaggcc
aaggtccgggccgaggtcagccacatcgcccaggagctggtggtcctctaccagaagcgc
ctcagcacgcccggctacgcctaccccgaggacaccccctggcagcgggagatggaggag
agcttcccgcaccgggagacccccgaccagctcgtcgccatcgaggaggtcaaggccgac
atgcaggccgagcggcccatggaccgcctggtgtgcggcgacgtcggcttcggcaagacc
gaggtcgccctgcgggccgcgttcaaggccgtgcaggagggcaagcaggtggcgatcctg
gtcccgacgaccctgctcgcccagcagcacttccagaccttcagcgaccgcttctcgggc
tacccggtgcgggtcgaggtgctgagccgcttcctcaccgccggccaggccaaggaggtc
atggccgggctccgcaccggcgaggtcgacctggtggtcggcacccaccgcctcctgtcc
caggacatcgagttcaaggacctggggctgctcgtggtcgacgaggagcagcgcttcggg
gtcaagcacaaggagcagatcaaggcgatcaaggccaacctcgacgtcctcaccctgtcg
gccacgccgatcccccggacgctcgagatgagcctcaccggcatccgcgacctcaccctc
ctccacaccccgccggccgagcgccagccgatcctcacctacgtcggcgaggaggacgag
cgggccatctccgaggccatccggcgcgagctgctgcgcgagggccaggtcttcttcgtc
cacaaccgggtccgcgacatcgagaagaaggcggccgagctgcgggacctggtgcccgag
gcccgcatcgccgtcgcccacgggcagatggacgagggcaccctcgagcaggtcgtctac
gacttctgggagggccgcttcgacgtcctggtgtgcacgacgatcatcgagtcgggcatc
gacatgcccacggtgaacaccctggtggtcgaccgggccgaccgcctcggcctgggccag
ctgcaccagctgcggggtcgggtcggccgggccgggcagcgggcctacgcctacctgttc
cacccccgcgacatgtccctgtcggaggaggcctacgagcggctgaagacgatcggcgag
gccaccgagctggggtcgggtttccggatcgccatgcgcgacctcgagatccggggcgcc
ggctccctcctcggcaccggccagtccggccacatcgcggcggtgggctacgacctgtac
gtccagatggtgagcgaggcggtggccgagctcaagggcgaggagcggcgcgagccggcc
gaggtgaagctggacctgcccctcgacgcccacctccccagcacctacgtgccccgcgag
gacctgcgcctggaggcctaccgccggctggccacggtcacgaccccgaccgaggtcgac
gacatccgggccgagtgggaggaccgctacgggcccgtgcccgagcccgccgcccagctg
ctcgagatcgcccgcctgcgcgccgagtgccaccgcatcggcgcccgcgaggtcaacgtg
accaagggcccggcgttcggcggtccggcccacaccgcccgggtgtcgcccctcgtcctc
aagcagagccagcagatccggctgcgccggctgttccccaaggcggtctacaaggaggac
caggagcaggtcgtcctgcccatccccaagaccccgacgctggccgccaccctcgtcgac
ctcctccgccagctcgtcccgccggagtag
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