Ideonella dechloratans: LRM40_10805
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Entry
LRM40_10805 CDS
T07737
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
idc
Ideonella dechloratans
Pathway
idc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRM40_10805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_10805 (mfd)
Enzymes [BR:
idc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRM40_10805 (mfd)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRM40_10805 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
SNF2-rel_dom
AAA_30
DUF924
Motif
Other DBs
NCBI-ProteinID:
UFU08818
LinkDB
All DBs
Position
2318158..2321610
Genome browser
AA seq
1150 aa
AA seq
DB search
MQLPHIAPGKRFTLPRPTGSADALLLARHAQARVAEGQVLGIVTAEPGDAQRLAEEMAFF
APGLRVAVFPDWETLPYDTFSPHQDLISERLATLWRIHSGTVDVVLLPATTALTRLAPPS
FLAGTTFQFKQKTKLDEAALKSQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSPVPYR
VDLFDNEIDSIRTFDPDSQRSLYPVPEVQLLPGREFPMDETARQRFRERWREKLEGDPTK
SRIYKDIAQGIATAGIEYYLPLFFDETANIFDYLGAQASLVLHGEVDEALQRFWTDTRER
HRFLQHDPERPILPPEAIYLKVEEFFTRTGAHATLALRGSEPVDWARPLPDVSVSRGATE
PLAALEKHLDSTPHRVLLMGESEGRRESLLELLRDHKIQVPTVETLADFLAGDEKVAITA
APLTAGFFWHEPEAQLAVQFITEGELFASAPGTRRRRKQEQTSNVDALIKDLSELKLGDP
VVHSAHGIGRYQGLVSIDTGLEGPSEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAP
LHKLGSQQWDKARRKAAEQVRDAAAELLNIYALRAAREGMAHRFSPHDYEAFAASFGFEE
TPDQQAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVHAGKQVALLAPTTLL
AEQHYQTIVDRFGKWPVKVAELSRFRSAKEVKVALEGIADGSIDIVVGTHKLLSKEVQFK
RLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQ
RRLAIKTFVRNEGKSVIREAVLRELKRGGQVYFLHNEVETIENRRQALAELIPEARIGVA
HGQMPERELERVMREFTTQRFNVLLCSTIIETGIDVPSANTIIISRADKFGLAQLHQLRG
RVGRSHHQAYAYLLVPDVEGLTKQASQRLTAIQEMEELGSGFYLAMHDLEIRGAGEVLGD
NQSGNMMEVGFQLYNEMLAEAVRALKNGEEPDLLSPHSAVFGAATEINLHTPALLPDAYC
GDVHTRLNFYKRLATAEKPEQLDRLLEEITDRFGKLPAQGQALFDTHRLRIQAKPYGVVK
IDANPKLMSVTFRPNPPVDALRIIELVQKNRAIKLVGNEKLRIDREIADPRERATYLRDL
LRSLGQPVKA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgccccacatcgcccccggcaaacgtttcaccctgccccgccccaccggctcg
gccgacgccctgctgctggcccgccacgcccaggcccgggtggccgaggggcaggtgctg
ggcatcgtcaccgccgagccgggcgacgcccagcgcctggccgaggagatggccttcttc
gcccccgggctgcgggtggcggtgtttccggactgggagaccctgccctacgacaccttc
agcccgcaccaggacctgatctccgagcgcctggccacgctctggcgcatccacagcggc
acggtggacgtggtgctgctgccggccaccaccgcgctcacgcggctggcaccgccctcc
ttcctggccggcaccaccttccagttcaagcagaagacgaagctggacgaggcggccctg
aagagccagctgaccctggccggctacagccatgtgagccaggtggtgtcgcccggcgaa
tacgcggtgcgcggcggcctgatcgacctgttccccatgggctcgccggtgccctaccgg
gtggacctgttcgacaacgagatcgactcgatccgcaccttcgaccccgacagccagcgc
agcctctacccggtgcccgaggtgcagctgctgcccgggcgcgagttcccgatggacgag
acggcgcggcagcgctttcgcgaacgctggcgcgagaagctcgaaggcgacccgaccaag
agccgcatctacaaggacatcgcacagggcatcgccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagacggcgaacatcttcgactacctcggcgcgcaggccagcctg
gtgctgcacggcgaggtggacgaggccctgcagcgcttctggaccgacacgcgcgagcgc
caccgcttcctgcagcacgacccggagcggcccatcctgccgcccgaggccatctacctg
aaggtcgaggagttcttcacccgcaccggcgcccatgccacgctggccctgcgcggcagc
gagccggtggactgggcccgccccctgcccgatgtgagcgtgagccgcggcgccaccgag
ccgctggccgcgctggagaagcacctggacagcacgccccaccgggtgctgctgatgggc
gagagcgagggtcggcgcgagagcctgctggagctgctgcgcgaccacaagatccaggtg
cccaccgtcgagacgctggccgacttcctggccggcgacgagaaggtggccatcactgcc
gccccgctgacggccggcttcttctggcacgagcccgaagcccagctggcggtgcagttc
atcaccgagggcgagctgttcgccagcgcgccgggcacccggcggcggcgcaagcaggag
cagaccagcaacgtcgatgcgctgatcaaggacctctccgagctgaagctcggcgacccg
gtggtgcactcggcccatggcatcggccgctaccagggcctggtcagcatcgacaccggg
ctggagggccccagcgagttcctgcacctggagtacgccgacaaggccacgctctatgtg
ccggtcagccagctgcacctgatcagccgctacaccggcgtgagcgccgaagaggccccg
ctgcacaagctgggctcccagcagtgggacaaggcccggcgcaaggccgccgagcaggtg
cgcgatgccgcggccgagctgctcaacatctacgccctgcgcgccgcccgcgagggcatg
gcccaccgcttctccccgcacgactacgaggccttcgccgccagcttcggcttcgaggag
acgccggaccagcaggccgccatccacgcggtgatccaggacatgatcagcccgcggccg
atggaccggctggtctgcggcgacgtgggcttcggcaagaccgaggtcgccctgcgggcg
gccttcgtcgcggtgcacgcgggcaagcaggtggccctgctggcgcccaccacgctgctg
gccgagcagcattaccagaccatcgtcgaccgcttcggcaaatggccggtcaaggtggcc
gagctcagccgcttccgcagtgccaaggaggtcaaggtggcgctggagggcattgccgac
ggcagcatcgacatcgtcgtgggcacgcacaagctgctgtccaaggaggtgcagttcaag
cgcctgggcctgttgatcatcgacgaggaacaccgcttcggcgtgcgccacaaggaggcc
atgaaggccttgcgcgccgaggtggacgtgctgacgctgaccgccacccccatcccccgc
accctgggcatggcgctggagggcctgcgcgacctgtcggtcatcgccaccgcgccgcag
cgccgcctggccatcaagaccttcgtgcgcaacgagggcaagagcgtgatccgcgaggcg
gtgctgcgcgaactgaagcgcggcggccaggtctacttcctgcacaacgaggtggagacc
atcgagaaccgccggcaggccctggccgagctgattcccgaggcccgcatcggcgtggcc
cacggccagatgcccgagcgcgagctggagcgggtgatgcgcgagttcaccacccagcgc
ttcaacgtgctgctgtgctccaccatcatcgagaccggcatcgacgtgcccagcgccaac
accatcatcatcagccgggccgacaagttcggcctggcccagctgcaccagctgcgcggc
cgcgtgggccgcagccaccaccaggcctatgcctacctgctggtgcccgatgtggagggc
ctgaccaagcaggccagccagcgcctgaccgccatccaggagatggaggaactgggctcg
ggcttctacctggccatgcacgacctggagatccgcggcgccggcgaggtgctgggcgac
aaccagagcggcaacatgatggaggtgggcttccagctctacaacgagatgctggccgag
gcggtgcgcgcgctcaagaacggcgaggagcccgacctgctgagcccgcacagcgcggtc
ttcggcgccgccaccgagatcaacctgcacacccccgcgctgctgcccgacgcctactgc
ggcgacgtgcacacccggctgaacttctacaagcgcctggccacggccgagaagcccgag
cagctcgaccgcctgctcgaagagatcaccgaccgcttcggcaagctgcccgcccagggc
caggccctgttcgacacccaccgcctgcgcatccaggccaagccctatggcgtggtgaag
atcgacgccaaccccaagctgatgagcgtgaccttccggcccaacccgccggtggacgcg
ctgcgcatcatcgagctggtgcagaagaaccgggcgatcaagctggtgggcaacgagaag
ctgcgcatcgaccgcgagatcgccgacccgcgcgagcgcgccacctacctgcgcgacctg
ctgcgctcgctgggccagccggtgaaggcctga
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