Idiomarina sp. X4: CWC33_08575
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Entry
CWC33_08575 CDS
T05226
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC33_08575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idi03019
]
CWC33_08575
03009 Ribosome biogenesis [BR:
idi03009
]
CWC33_08575
Enzymes [BR:
idi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWC33_08575
Messenger RNA biogenesis [BR:
idi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWC33_08575
Ribosome biogenesis [BR:
idi03009
]
Prokaryotic type
rRNA helicases
CWC33_08575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
SecA_DEAD
MatB
Motif
Other DBs
NCBI-ProteinID:
ATZ73748
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All DBs
Position
1797746..1799509
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AA seq
587 aa
AA seq
DB search
MSKTQTSLSFSDMALPSAVLEQLNAMGFETPTPIQQQSIPALLEGNDVLGEAQTGTGKTA
AFGLPALAKIDPSLKQTQVLVVTPTRELAIQVAEALEGFSKKMRGVGVATVYGGAAFGPQ
VKALKQGTSIVVGTPGRLIDLLNKNVLQLDGLKVAVLDEADEMLNMGFIEDIETILKGVP
ETAQRALFSATMPNAIRKLAKTFLNKPLNIQIEAVAREKATIKQKAWKVQGMTKMTALTR
LLEVTPYQRALIFVRTRQDTMDVAELLQRSGFKASPLSGDLNQAQREQTVSQLRSGHIEI
LVATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFFRAKERHLLR
HYERLTNAPVEFFDVPNASELSKYRQQQLLEKLQASLAEETASADKPKLEKLLAQWLEQS
ELTAEEIALALLTQQNEQRPLFLKEDRPVRERTERSARNDRGDKRKPRAERGGRAADIDF
DTYKIQVGKEHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDVMHVLK
KARVRQQPMGLELSDEQVKRAPRPPRDRDARGPKRRQAGKGAARRFN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagactcaaacgagcctgtcgttcagcgacatggccctaccttctgctgtgctt
gaacaactgaacgcaatgggttttgaaaccccaacccctattcagcagcagtcaatccct
gctctgttagagggtaatgatgtgttaggtgaagcacaaactggtaccggtaaaacagcc
gcatttggcttgcctgcgctggcgaaaattgacccttcgttgaaacagactcaagtctta
gtagtaacgcctacacgtgagctagccattcaggttgctgaagcgttagaaggcttttca
aagaaaatgcgtggtgttggcgtggcaaccgtttatggtggtgctgcctttggtccgcaa
gtaaaggcgctaaaacaaggtacctcaattgttgttggtacgccggggcgtcttatcgac
ttactgaataaaaacgtattgcaactggatggtttgaaggttgcggtattggatgaagcc
gacgaaatgttgaacatgggcttcattgaagacatcgaaaccattttaaaaggtgtgcct
gaaaccgcccaacgagcgttgttttcagcgactatgccgaatgccattcgtaaattggcg
aaaaccttcctgaataaaccattgaatattcagattgaagcggttgcgcgtgaaaaagca
acgattaaacagaaagcgtggaaagttcagggcatgactaaaatgaccgctctgactcgt
ttattggaagtgactccgtatcaacgtgcattgattttcgtgcgcactcgtcaggacact
atggatgttgctgagttattacaacgttcaggattcaaagcgtcgccattaagcggcgat
ttaaaccaggctcaacgtgagcaaacggttagccagttgcgcagcggccatatcgaaatt
ctggttgcgacagacgttgttgcgcgtggtctggatgtgcctgaaattacccacgtgatt
aactatgacttgccaagtgatactgagtcttatgttcaccgtatcggccgcactggtcgt
gcgggacgttcaggcgaagcgattctgttcttccgtgcaaaagaacgtcatttattgcgc
cactacgagcgtttaaccaatgctccggtagagttctttgacgtgccgaatgcaagtgag
ctgagcaagtatcgtcagcagcagctgttagagaagctgcaggcgtcactggctgaagag
accgcaagtgccgacaagccgaagctggaaaagttactggctcaatggctggagcaatct
gaattgactgccgaggaaattgcattagcgctgctgactcagcagaacgagcaacgtccg
ctgttcctgaaagaagaccgtccagtgcgtgagcgtactgagcgctcggctcgaaatgac
cgtggcgacaaacgcaagcctcgagctgagcgtggcggacgcgcggcggatatcgacttt
gatacctataaaatacaggtgggtaaagaacacggcgcccgccctggtgatattgttggc
gcgattgcaaacgaagcgtctatggacagcaagtacatcggtcaaattcagttgttcgat
aaccactcgctggttcagttgccaaaaggtatgccgaaagacgtcatgcacgtactgaaa
aaagcgcgtgttcgtcagcagccaatgggtcttgagctaagtgatgaacaagttaaacga
gcgccacgtccaccgcgtgatcgtgacgcccgtggtcctaaacgccgtcaggcaggaaag
ggcgcagcacgtcgttttaactaa
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