Iocasia fonsfrigidae: GM661_16515
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Entry
GM661_16515 CDS
T07718
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ifn
Iocasia fonsfrigidae
Pathway
ifn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM661_16515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifn03400
]
GM661_16515 (mfd)
Enzymes [BR:
ifn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM661_16515 (mfd)
DNA repair and recombination proteins [BR:
ifn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GM661_16515 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
DUF1465
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QTL99432
UniProt:
A0A8A7KNL8
LinkDB
All DBs
Position
complement(3441626..3445126)
Genome browser
AA seq
1166 aa
AA seq
DB search
MVLNSLFLNNKKIADFLLALNDRQNLMVKGLVNSRLNFFIANIIESLPDNILLVVNDTYH
VEQYYEDLIRFLPEERVLIYPEIEVLPHEQIVEDYKELGSRLKVLQELTIFPDKAKIVIT
TTANLLRTTMPPEAFEKYSLYLNTGQEMNLSKLVSSLAVLGYKRSEMVEEAGEFSVRGGI
VDIYTLSVEKPIRIEFFGDEIDSIRSFDLGSQRSFLELEEIVIPPSREIVFSKDDFNRVV
PVIRKEYQDTIKVLKKSGNDEEADYLLDRMNDNLEKLSELNDFPGNQQFLPFFYEPASLF
DYLPEKAGIFINQAGRFWERVRHLDRELMATQATLLEQGSVTPGYRGNFLDINQLIEELS
KYSNILFSSDIASTVSPIDTSKSFLFTTRGVEPYHGKLPLLLDELKKLQDNKYRVMITLN
SRTKVSRLIKYLQEEELLVIKEGDSLKPGAIMVREGSLAEGFIFEDLKLVVFTEKEVFGQ
AQKKKRQRLHDLEEGVNISSFEELSIGDYVVHENHGVGKYTGVETLDIQGKHQDYLVLQY
AGEDKLYVPTEQVNLVQKYIGADQKPPSLYKLGGSEWKKVKQKVKDSVKEMAVGLLELYA
ERETVEGYSFSKDTVWQQEFEEAFPYEETPDQLQAIKDVKQDMEADTPMDRLLCGDVGYG
KTEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFVERMKDYPIAIEMISRFRTRSEQK
DVLKRLALGEVDIIIGTHRLLSKDIIFNDLGLLVVDEEQRFGVTHKERLKDFKRNVDVLT
LSATPIPRTLHMALVGVRDMSVIETPPQNRYPIRTHISEFNRELVRDAIRKEIGRQGQVY
FVHNRVEDIEEKADMVKKLVPEARVAVAHGQMNEHKLEKLMMNFYNNDYDVLVCTTIIET
GLDLPNVNTIIVNRAEIMGLAQLYQLRGRVGRSNRVAYAYLLYERDRILPEVAEKRLGAI
KEFTNLGSGFKIAMRDLEIRGAGNLLGPEQHGHIATIGFSLYCKLLENAIEELKGQKDED
KLEVEIKLAVDAYIPDDYITDAKQKIEIYKKIMAVKKEETLSSLIDELIDRFGDPPEVVV
NLINISKIKIAARKLGINKITYKNSYIICYFASAKDIDPDILFKLIDRHKGKIRIKSGRT
PSLGIKGKDIMFLEKILQDFIVLSGK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggtgttgaattctttgtttttaaacaataaaaaaatagctgatttcttattggcctta
aatgacaggcaaaatctcatggttaaggggcttgttaattcacggctgaatttttttata
gctaatataattgagagcctacctgataatatacttctggtagtaaatgatacctaccat
gttgaacaatactatgaagacctgattcgttttttgcctgaagaaagggttttgatatac
cctgaaattgaagttctaccacatgagcaaatagttgaggattataaagaacttggtagt
agattaaaggtattacaggaactaacaattttccctgataaagccaaaattgtaataact
actactgccaatttattaaggacgaccatgccacctgaagcctttgaaaaatattcactt
taccttaatactgggcaggaaatgaatctttctaaattggtttcttctctggctgtactg
ggctataaaaggagtgaaatggttgaggaagcaggtgaatttagtgtgcgtggtggtatt
gttgatatttatactctttctgttgagaaacctatcaggatagagttttttggtgatgag
attgattcaataaggtcatttgacctgggatcccagcgctcgtttcttgagctggaagag
attgttataccaccatccagggaaattgttttttcaaaggatgattttaatagggtagta
ccggttattcgtaaggaatatcaggatacgataaaagtcttgaaaaaatcgggtaatgat
gaagaagctgattatttattagatagaatgaatgataatttagaaaaattatctgaattg
aatgatttccctggcaaccaacaatttttgccttttttttatgagcctgcttctcttttt
gattatctgccggagaaggcgggaatttttatcaatcaggcagggagattctgggaaagg
gttagacaccttgatagagagttaatggcaacccaggctaccttgttggagcaggggagt
gtaacacctggatataggggaaattttctggatattaatcagcttattgaggaattaagt
aaatatagtaatattttattttcttcagatatagccagtacagtatctcctatagatact
agcaaaagctttttatttacgacaaggggtgttgaaccatatcacggtaaacttccttta
ttattagatgaattaaaaaaacttcaggataataagtaccgggtgatgataaccttaaat
tccaggaccaaggtaagtagacttattaaatatctacaagaagaggagctgttggtgatt
aaggaaggggattcccttaaacctggagcgattatggtcagggagggaagtctggcagag
ggttttatttttgaggaccttaaattagttgtctttacagaaaaagaggtctttggtcag
gctcagaagaaaaaacggcagcggttacatgacctggaagaaggtgtgaacatatcatca
tttgaagagttaagtattggtgattatgttgttcacgaaaatcatggagtagggaaatat
actggggtagaaactctggatattcagggtaaacaccaggattatctggttttacaatat
gctggtgaagataaattatatgtgccgactgaacaggttaatttagttcaaaaatatatt
ggtgcagaccagaaaccgcctagcttatataaactgggtgggagcgaatggaaaaaggtc
aaacaaaaggtaaaggattcagtaaaagaaatggctgttggtcttctcgaattatatgca
gaacgggagacagttgaaggatatagtttttctaaagatacggtctggcagcaggagttt
gaagaggctttcccttatgaagagacacctgatcagttgcaagctatcaaagatgtaaaa
caggatatggaagctgataccccgatggatcgtttgttatgtggtgatgtaggttatggt
aagacagaggttgcgattcgtgctgcttttaaggctgttatggatggcaagcaaacagcc
gttttggttccgactactatacttgcccaacaacactataatacatttgtagaaagaatg
aaagattatccaattgcaattgaaatgatcagcaggtttaggacccgttctgagcagaag
gatgtcttaaagaggctagccctgggagaggttgatataattattgggacacacaggcta
ctatctaaagatattatttttaatgatctggggttattggttgttgatgaagaacagaga
tttggggttacacataaggagcgtttaaaggattttaaaagaaatgtggatgtactgacc
ctatcagcaaccccgataccaaggactcttcatatggctcttgttggggtcagggatatg
agtgttattgaaacgccaccacaaaatagatatccgatcaggactcatattagtgaattt
aatcgcgaattagtacgtgatgctatcagaaaagagataggcaggcagggacaggtatat
tttgtacataacagggtagaagatattgaggaaaaagcagatatggttaaaaaattagta
cctgaagccagagttgccgtagcacatggtcagatgaatgaacataaactggaaaaatta
atgatgaatttttataataatgattatgatgtgctggtctgtacaactattattgagact
ggtcttgacctgccgaatgttaatacaattattgttaatagggctgaaataatgggttta
gctcaattatatcagctgcgtggcagggtaggccgctctaaccgggttgcctatgcctat
ttgttatatgaacgggatcgtattttgccggaggttgctgaaaagcgtttgggtgcaatt
aaggagtttacaaaccttggttccggttttaagattgctatgcgtgacctggaaatcagg
ggtgcaggtaacttattgggtcctgaacaacatggtcatattgcaacaattggtttttct
ttatactgtaaactacttgaaaatgcaattgaggaattaaaaggtcaaaaagatgaagat
aaattggaagttgaaataaagttagcagtagatgcctatatacctgatgattatattaca
gatgcaaagcaaaaaattgaaatatataaaaaaataatggctgttaaaaaggaagagacc
ctcagtagtcttatagatgagttgatagaccgttttggtgatcctccagaggtagtggtt
aatttgattaatattagtaagattaaaattgctgcccgtaaactgggtataaataaaatt
acctataaaaatagttatattatatgttattttgcaagtgctaaagatatagatcctgat
atattatttaaattgatagacagacataaaggaaagataagaataaagtcaggaaggaca
ccgtctctgggaattaaaggtaaagacatcatgtttttagaaaagatcctacaggatttt
attgttctttctggaaaataa
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