Ictalurus furcatus (blue catfish): 128604273
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Entry
128604273 CDS
T09387
Name
(RefSeq) collagen alpha-1(XIX) chain-like isoform X1
KO
K24340
collagen type XIX alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128604273
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128604273
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128604273
NCBI-ProteinID:
XP_053475250
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Position
29:6329426..6579528
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AA seq
1154 aa
AA seq
DB search
MSHWLKWIFFWIVNAIPFTFGMAVNDKIDHLCPPLKLDKRWYVNMNDRHEFTGFDLAEKF
VLRKGTSTDDRPFFRLGNKPLIKATELVFQSGLSHEYSLVTMFRLRKSTKKDRWLLWQLF
DQAGESQVSVVVDGAKKVVEFTAMGLLKNKLHYVFKNRDLHILFDRQWHKLGISVRSSTV
AVYVDCKLIETHLTGARAAVDLDGRALITTRLEDGRPVDIELQEILIFCDPNVAGETNCC
DASGAICGVREAHAPTSSPLLTDYRRQMLFTPTQQPSDQCQCRAEKGEPGHQGVAGFPGT
KGDKGEKGDSGTNGYPGIPGEKGDMGIAGMPGLDGHPGNKGEPGSAGEQGIDGEKGEKGA
AGEHGPMGTPGLDGLKGDPGPEGQPGLKGEKGDAGPPGLSNIKEGQKGDQGPPGVAGEKG
EAGLPGPPGAPGKEGKRGRRGYSGGPGIPGPPGPPGSSEGRGIKGEKGDPGVMGEIGQKG
EKGDAGQPGQEGALGIKGQKGEVGLRGPPGPVMTAHGLRHLSVPSEAGEKGEKGEKGDLG
EKGIPGLPGVKGNDGLPGQIGKPGPQGKEGLPGPAGFQGLSGDKGLVGEPGSPGRDGEKG
QKGDPGGIRGPQGLPGPKGEPGVGALGYTAEVVPGPRGSRGQKGERGMPGIPGEPGEKGE
PGVGIRGPPGMMGPKGEPGVEGPHGPPGLQGPPGAPGSEGPPGREGRPGPPGEPTALPIV
GDVGSLLKNACSVCQMGIPGLPGQKGEKGAPGAPGGVGIQGDKGLRGPLGNPGKEGPKGV
KGERGFPGPIGDKGDEGSPGVPGLPGATGQSGPPGPIGRPGISGPAGPKGEQGSKGPPGR
PGLPGPPGVPYVDGNGMSSLYKLQSGGPPGPPGPPGPKGDEGRVGDPGPMGLPGFEGLPG
AKGDTGIPGPPGVPGPMGKPGARGEPGIPGEPGVRGPVGETGFPGSEGPPGVPGRPGKDG
NPGYEGPAGRPGDRGSKGERGDPGIPGERGVQGERGRPGEKGLSGTQGLPGEKGHPGPPG
PVGSLLNDFNTMKEIKMFIQNEVLRVFEERLTSYTMLEKVPAPILAAHGRQGPPGPRGND
GSPGLPGEPGPPGPQGYRGQKGERGQIGLGILGAPGPAGPPGPPGIGFPGPQGPQGKCEP
NDCTHTFPHTNQEV
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgagtcactggctaaaatggattttcttctggatagtaaatgccattccttttactttt
ggcatggcagtaaatgataaaatagaccatttatgccctcctctaaaactggacaaaaga
tggtatgtcaacatgaacgaccgtcatgagtttacagggtttgatttggcagaaaagttt
gttcttcggaagggaacaagtacagacgacagacctttcttcagactaggcaataagccc
ctgattaaagccacagagttggtatttcagagtggactgtctcatgagtactccctggta
actatgttccgactcagaaaatctacaaagaaggaccgatggcttctttggcagctcttt
gaccaggctggagaatcacaagtatcagtagtagtggatggggctaaaaaggtggttgag
tttacagccatgggcttactgaagaataaactccactatgtattcaaaaaccgggatctg
cacatcctctttgaccgccagtggcataagcttgggatatctgtacgaagtagcactgtg
gcagtctatgtagactgtaagctaattgagacacatctgactggagctagagctgcagta
gacttggatggacgtgcacttattactacgaggctggaggatggacggccagtggacatt
gagcttcaggagattctgatcttttgtgatcccaatgtggcaggagagaccaattgctgt
gatgcatcaggagccatctgtggtgttagagaggcccatgctcctacctcttccccactg
ctcacggattaccgccgccaaatgctgttcacgccaacccaacagccctctgatcaatgc
caatgccgggcagagaagggagagcctggtcatcaaggtgtggctggatttcctggaaca
aaaggcgataaaggagagaagggggattcaggaactaatgggtatcctggtattcctggg
gagaagggtgacatgggcattgctggcatgcctggcttagacggtcatccggggaataag
ggtgagcctgggtcagctggagagcaaggaattgatggtgaaaagggtgaaaaaggagct
gcaggagaacatggtcccatgggaacacctggactagatggtttgaaaggagacccagga
cctgagggccaacctggactgaaaggtgaaaaaggagatgcaggtccaccaggactttct
aatataaaagaaggtcagaaaggagaccagggtcccccaggtgttgctggagaaaaggga
gaagctggtttacctggtccaccgggagccccaggaaaagaggggaaaaggggtcgcaga
ggatattcaggggggcctggtattccgggaccaccgggaccccctggatcatctgaaggc
agaggcatcaagggggagaaaggagatccaggtgtgatgggagaaataggacagaaggga
gagaaaggagatgcaggtcaaccaggtcaagagggtgcccttggcattaaaggacagaag
ggtgaagttggcctcagaggacccccaggcccagtgatgacagcgcatgggctcagacac
ctctctgtaccaagtgaagcaggggagaagggtgaaaagggggaaaagggagacctgggc
gaaaaaggcattccagggctgccaggtgtcaagggaaatgatggattgccaggacaaatt
ggaaagccaggtccacagggcaaagaaggactgcctggtcctgctggatttcaaggtctt
tcgggagataagggattagtaggggagccaggatcaccaggcagagatggagagaaagga
cagaagggtgatcctggtggaatccgagggccacaaggcctgccaggtcccaagggcgag
cctggagttggagcacttggttatactgcagaggtagtacctgggccaagaggatcaaga
gggcaaaagggagagaggggaatgccagggataccaggagagccaggagagaaaggagaa
cctggggtgggaattcgtggtccacctggcatgatgggaccaaagggggagccaggagta
gagggtccacatggccctccaggtttacaaggtcctcctggagccccaggaagcgaggga
cctccaggtcgtgagggcagaccaggacctcctggtgaaccgacagcactgccaattgtc
ggagatgttggctcacttctgaagaatgcctgcagtgtgtgccagatgggaataccagga
ttacctggacagaaaggggagaagggagcacctggagctcctggtggggtgggcattcaa
ggagataaaggtctgagaggcccacttggtaacccaggaaaagagggtcctaagggcgtg
aagggggagagggggtttcctggcccaatcggggacaaaggtgatgagggttctcctggt
gttccaggactcccaggtgcaacaggtcaaagtggccctcctggtcccattggcagacct
ggaatttcaggtccagcaggacccaaaggggaacaaggcagcaagggtccaccaggcagg
cctggacttcctggacctcctggtgtcccctatgtggatgggaatggaatgagcagtctg
tacaagcttcagagtggaggacccccaggaccaccaggacctccggggcccaaaggggat
gaaggcagagtaggtgacccagggccaatgggattgccaggctttgaaggactgcctgga
gctaaaggagacactggtattcctggtccacctggagtcccaggtcctatggggaaacct
ggtgctcgtggtgagccaggaatcccaggagaaccaggagtgcgagggcctgtgggagag
acaggtttccctggatctgaaggacctccaggtgtacctggaagacctggaaaagatgga
aatcctggatatgagggaccagctggcaggcctggtgatagaggctccaaaggagagcgg
ggtgatcctgggatccccggagagagaggtgttcagggagagaggggacgacctggagaa
aaagggctttctgggacacaaggcctgcctggtgagaaaggacatcccggtccacctggt
cccgtaggatcactgctgaatgatttcaacaccatgaaggaaattaaaatgttcatccag
aatgaagtattgcgcgtgtttgaagaaaggttaacgagttacaccatgctggaaaaggtg
ccagcaccaatattggctgcacatggtcgccaaggccccccagggccccgtggaaatgat
gggtccccaggtcttcctggagagccaggacctccaggccctcaaggctatcgaggacag
aaaggggagcggggtcaaataggcctggggatcctaggtgcaccaggccctgcaggccca
ccagggccacctggaataggattcccagggcctcagggcccacagggaaaatgcgaacca
aatgactgcacccatacttttccccacaccaaccaggaggtttag
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