Ictalurus furcatus (blue catfish): 128615673
Help
Entry
128615673 CDS
T09387
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ifu03036
]
128615673 (chd6)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128615673 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
128615673
NCBI-ProteinID:
XP_053493889
LinkDB
All DBs
Position
12:589934..717664
Genome browser
AA seq
2937 aa
AA seq
DB search
MSATHILMHTSATSATTASEQNAQTTFSIGHFGKEQIRIIDGPSNHCVAHAKLSGMREVV
QGSSSPSPHLSVSPVNSEEDDGGGGPRVRKKRKKKDKKDTREDRECNNRPKKKKVQKEGK
GLLLKKSKALNELKETKKVEGKVVKDPKKVKKVQEVKSKTQGKDVTAPPRQRGRKPKEQS
VVPLEKRKKGKRKSDALQEAAESDDTASLCTLATGGEESTDPMDNTKRRSGRQVKRRKYN
EDLDFKVVDDDGETIAVLGTERIPALSSSTLAWQAEEPPEDEANIIEKILSVRTIKKETF
HGEPVEESEEFYVKYRNFSYLHCKWATLEELEKDPRIHQKIKRFRNKHAQMKHIFSELDE
DLFNPDYVEVDRVLEIAITTDTETGEEVTHYLVKWCSLSYEESTWELQEDVDPVKIREFE
ELRKIPELTSVERPSPEQWQKLEHSREYRNGNQLREYQLEGMNWLLFNWYNRKNCILADE
MGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQISRQ
MILQYEMYHRDEQGNIMPGVFKFHGIITTFEMIMADCPELKKVNWRCVVIDEAHRLKNRN
CKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPVQFPSESTFLEEFGDLKTEEQ
VKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAKGAN
QHNMPNLINTMMELRKCCNHPYLITGAEEKILDSFRKTHNPDAPDFQLQAMIQAAGKLVL
IDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCK
VDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL
ITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQLSKMEVEDLLRKGAYGALMDE
EDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVSSGNRTDISLDDPNFWQKWA
KIAELEIDSKEEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRSRRLGE
RNKRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLTERDVEVLCRALLAYCVRHYRG
DDKIKSFIWDLITPTKDGHNQALHNHSGLSVPVPRGRKGKKLKNQLSPPELKNADWLVHC
NPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAANQALEGVSASKLEVALPEV
DYMEIPTGWWDAEADKSLLIGVHKHGYERYNAMRADPQLCFLERVGMPDVIALTAEQSGA
EVAPDIHDSVSKSDDIKEVDGKPEGIEDKEKKKQANSFSEDTEKHDSSLGVTRPDGLSEE
VVEQGQALWPTASALTARLRRLITAYQRYTRREPFRHEILGQEGIGPVAWQLGEELRRCM
TNSDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPEKKVFDWRQFRIFARLERKTDESLE
RYFWSFVSMCRTACRLPPRKDEGLVDPTLCIEPITEERAARTLYRIELMRKVREQVLNHP
LLEERLKLCRPSLYLPVWWECGKHDRDLLNGVAKHGLSRTDFYILNDSHLSFLETYRNYI
QKENHGNPVSSLPPQHCYLGHCHSPQPTEYHHTLFHSTQIHQHMHAHGHHQASEVAAASE
SESTLTMPATSRESFLDCPTINDSLDLGSLQHEGLASGSLHSKTSKEPFNGFPFNSSSAG
QSMLNSYDVQGTQGDMTDSIDGKLRNDVLVGEQGSSEETGLMAPSVELNELQTPWGSSDH
AETTDIFNEGDPILGEPSLETEFLDHAQSEDGQEREDPLTGCLSIPSSDSQSDHVEPLAP
SFMLFKDLNTGETSMEQPDLSASPPEYVAPQPLALSDVGIDQAGSIGEELETKLCDSDII
HCNPSSEDRAEHVEYQFKKEETSQGGHSNLETDQKLEEIENKANSVPSLETLMENHLEPL
KVECDMPSEEHLKDHCQVYLEESCEKLLMEPDKVPLTEPFDIPCKATLEELLEGSSHDPS
EKLLVKEASGKPLENSLELVENSPANTTISSHTLPSSFPLFTTFPTPVPDHCVFPDPEAD
HDIKQELLLGSIESEVKPKPDSTTLTPHLEQAADMEVKVEMKEGETKTTALLGDSFVEAT
QFDPSICEVAGSLHDPKEPTIARLLQEKPHYSFSEWPKDRVIINRIDSICQAILKGKWPS
PSHQYESPNSVINTCMSNSAQLRAGFLPARIPLPQDLNLNIPHSIPHIHKERLVTPAFLS
ELKRSKCRFEFNTEVPVKPIDLGEKIQLGIPHHGGTLLLNGWQEAAMDLSNPAEIAFSRE
AESMRHVTHAVQSAPHKMPNLNSMEGLMGLDMAGILQAGLVHPVTGQIVNGSLRRDDSIM
RRRRGRRRNVETLDLGLMKEQDINLTKVKGQPETVNHPIVSSTSSQPDCLTHPPSAPPPS
ESLTMSFDREAASKGLMEWLRQNPSYRMELPAFSMSQTASMLHSFAERPKQRRHRCKDPT
KLDVNSLTGEERVPVVHRNTGRRLGGAMAPAIKELSQWLDANLEYFVAPDWADVVKHSGF
LPEGKFTRILTEPVNRDTSTRRRGRRPRSEMPKAPELPAGIGPLFMNDGLIGMDLVNLSN
LRNVPGIPISGLMGFPPGLATSLQGEDTKNGLSMLPMMLHSMSTVQPPMYGTHLSGMINQ
SLSATASTVTTAASSSSTATVTSISSATVALSPSPAVSSSTATSKERASPEPSTERRSMD
ERTLGENEKQMLPAVPSPTVTSSSASITSSGSHLTFNPFLIPGMPHGLLYPHMFLPHGSI
MALPSASDSTGITKQKKKKIRDEGRVEEDSGLLEVQDGEMKGTGDIETLESNHKEGRLKE
SLPAVDTSKVTSNDDSDPSPVVNTAKAVEEIKGEVEKTVECSMPVPKDDDLDVTQDV
NT seq
8814 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacgcacattttaatgcacacttcagctacttcagccaccactgcctctgag
cagaatgcacaaaccactttttccataggccactttggcaaggagcagatccgcatcatc
gatggcccatctaaccactgtgtggctcatgcaaagctctccgggatgagggaagtagtc
caagggtctagcagccccagtccccacctttctgtttcaccagtcaacagcgaggaggat
gatggaggaggtgggcccagggtgaggaaaaaacggaaaaaaaaagacaagaaagacaca
agagaggacagagagtgcaacaatagaccaaagaaaaagaaggtacagaaagaagggaag
gggctgctcctgaagaaatcaaaagcactgaacgagctaaaagagacaaagaaggtggag
gggaaggtagtaaaggatcctaaaaaggtcaagaaagttcaagaggtcaagtcaaaaaca
cagggaaaggatgtgaccgccccaccaaggcagcgtgggaggaagccaaaagagcagagt
gttgtccccctggagaaaaggaaaaaagggaagcggaaaagtgatgcattgcaagaggcc
gctgagagtgatgatacagcctcactctgtacactggctacaggaggagaagaaagcaca
gaccctatggacaacactaagaggagatcaggtcgtcaggtgaagcgtaggaagtacaat
gaagatctagattttaaagttgtggatgatgatggtgagaccattgctgtgttgggaaca
gagcgaattcccgctctctcctcctctaccctagcttggcaagcagaggaaccccctgaa
gatgaagccaacatcattgaaaagattctctctgtgcggactattaagaaagagacattc
catggagaaccagttgaagagtcagaagagttttatgtgaagtacagaaatttttcctac
cttcactgtaaatgggcaacattggaggagctggaaaaggacccgcgcattcaccaaaaa
atcaagcgcttcaggaacaaacacgcacagatgaagcacattttctcagagctggatgaa
gacctctttaatccagactatgttgaagtagatcgggttttggagattgcgatcactaca
gacacagaaactggagaggaggtgacacactacctggtaaagtggtgttctctgtcctat
gaggaaagcacttgggaactgcaggaggatgtagaccctgtgaagattcgtgagtttgaa
gagctcaggaaaataccagaactcacgtctgttgaaaggccttcaccagagcaatggcaa
aagcttgaacattctcgtgaatacagaaatggcaaccaactcagagaataccagctagaa
ggcatgaattggcttcttttcaattggtacaataggaaaaattgtatcctagctgatgaa
atgggccttggaaaaaccatccagtccataacattcctctatgagatcttccttatgggt
ttgagaggtcccttcctaatcatcgctcctctctcaaccattacaaactgggagagagag
ttccgcacatggacggagattaatgtaattgtttatcatggtagccagatcagccgccag
atgatcctgcagtacgagatgtatcacagagatgaacagggaaacataatgcctggcgtg
tttaagtttcatggtataattaccacatttgagatgatcatggctgactgccctgaactg
aaaaaggttaactggcgctgtgtggtgattgacgaagcccatcgactgaagaatcgtaac
tgtaaactgctggaaggactcaaactcatgaacttggagcataaagtactccttacaggt
acacctctacagaactctgtggaggaactcttcagtctgctcaacttcctggagccagtg
cagtttccctcagagagcactttccttgaggagttcggagatctaaaaacagaggagcag
gttaagaagcttcaagcaattttgaagcccatgatgttgaggcggctgaaggatgatgtg
gagaagaacttggcccccaaagaagaaaccatcattgaggtggaactcactaatatccag
aagaaatattaccgggccatcttggagaaaaactttacctttctggcaaagggagccaac
cagcacaatatgcccaacctaatcaacactatgatggagctacgcaagtgctgcaaccat
ccatatctcatcacaggtgctgaagaaaagattctggatagctttaggaaaacccacaat
cctgatgcaccagatttccagctccaggctatgattcaggcggctggtaaattggtgctt
attgacaagctgctgcccaaactcattgctgggggacataaagtgttggtgttctcccag
atggttcggtgcctagatatactagaggactacctcattcagagaaggtacacatatgag
cgtattgatgggagagtcagagggaatctgcgacaagcggctattgatcgattttgtaag
gtggattcggaccgctttgtcttcctgctgtgcacaagagctggggggctgggaatcaac
ctcaccgctgcagatacttgcatcatattcgactctgactggaacccacagaacgaccta
caggctcaagctcgctgtcatcggattggccagagcaaagctgtgaaggtttatcgtctt
attacacgcaattcgtatgagagggagatgttcgacaaagccagtctaaagctgggactg
gacaaagctgttctacaggatatcaaccgcaaaggcagtttaaatggggtacagcagctg
tctaagatggaagtggaagatctcttgaggaaaggtgcatatggtgcccttatggacgag
gaagacgaaggctcaaagttctgtgaagaagatattgatcagattctgcaacgccgcact
cagaccatcaccattcagtctgaggggaagggatccacatttgctaaggccagctttgtt
tcctctggaaaccgaactgacatctctctggatgacccgaacttctggcagaaatgggca
aaaatcgctgagctggagattgactcaaaggaagagaaggagagtcttgtgattgataca
cctcgtgtgcggaaacaaacacgacactacaactcatttgaggatgatgagctgatggag
ttctcagagctagacagtgactcagaggagcgtccttgtcgttcacgacgccttggcgag
cgcaacaagcgatatcttcgagcagaatgcttcagagtggagaagaacctgcttatattc
gggtgggggcggtggaaggacatactgaatcatggacgttttaagtggcaccttacagaa
agagatgtggaagtcctgtgcagagcactgcttgcctactgtgtacgtcactacagaggt
gacgacaagatcaaaagcttcatctgggacttaatcacacccaccaaggatgggcacaat
caagcactccataaccactcaggactgtctgttcctgtaccccggggacgcaagggtaag
aaactaaagaaccagttaagtcctcctgagctaaagaatgctgactggctagtccactgt
aaccccgaagtagtactccaggatgacagctacaagaaacacctcaaacagcactgtaac
aaggtactgctgagggtgcggatgctgtattaccttaaagcagaggtactcggggaggct
gccaatcaggctctagaaggagtctcagccagtaaattagaggtggccctgccagaagtt
gactacatggaaattcctactggttggtgggatgcagaggcagataagtctctgcttatt
ggagtacacaaacatgggtatgagaggtacaatgccatgcgtgcagatcctcagctctgt
ttcttagagcgggtgggaatgccagatgtcattgcacttacagcagagcagagtggtgct
gaggttgcccccgatatacatgacagtgtaagcaagagcgatgatataaaagaagtagat
ggtaagccagagggaatagaagacaaagaaaagaaaaagcaggcaaactctttctcagag
gacacagagaaacatgacagttctcttggagtgactcgtccggacggattatctgaggag
gtagtggagcaaggtcaggcactatggccgacagcatctgctcttacagcaagattacga
cgacttattactgcctatcagcgctacacacgccgtgaaccatttcgtcatgaaattctt
gggcaagagggcattggtcctgttgcctggcaactgggtgaggagctacgacgctgtatg
acaaattctgatccacttttccttgagtggcaaagaaggtggacacgccgtgaacaggct
gatttctaccgtactgtgtcctcattcggggtggtatatgacccagagaagaaggttttt
gactggcgccagttccgtatctttgctcgtttagagagaaaaacagatgaaagtttggag
agatatttttggagctttgtgtctatgtgtcgtactgcctgcagactgcccccaaggaaa
gatgaaggtctggttgaccccactctatgtatagaacccattactgaagaacgagctgct
cgtacattgtaccgcattgagctcatgcgaaaggttcgtgagcaggtgttgaatcacccg
ctcctagaggagcggctgaagctgtgtcgtcctagtctttacttgcctgtttggtgggaa
tgtggcaaacatgaccgtgatcttctcaacggtgtagccaagcatggtcttagccgcact
gacttctacatattgaatgattcacatttgtctttcttggagacctaccgtaactacatc
cagaaagaaaaccatggcaacccagtgtcaagcttgccccctcaacactgctatctgggt
cactgccattctcctcaacccacagagtatcatcataccctctttcactccacacaaata
caccagcacatgcatgcacatggacaccaccaagcctcagaagtagcagcagcatcagaa
tcagaaagcactttaactatgcctgcaacctccagggaaagcttcttggattgccccaca
attaatgactctttggatcttgggtctttacagcatgaaggcttggcctctggctccctt
catagcaaaactagcaaagagcccttcaatggatttccctttaattcctcctccgctggt
cagagtatgttaaattcatatgatgtacaagggacacaaggagacatgactgactctata
gatgggaaacttcgaaatgacgttcttgtgggagaacaggggtcttcagaggagactggg
ttaatggccccttcagtggaactaaatgaacttcagaccccatggggaagctcagatcat
gctgaaacaactgatattttcaatgaaggtgatcctatcttaggggaaccttcactggaa
acagaattcctggatcatgctcagtctgaagatggacaggaacgggaggatccacttaca
ggctgtttaagcattcccagttctgactcacagagtgaccatgtagaaccactagcacca
agcttcatgttgttcaaggatctaaatactggagagacttccatggaacagccagattta
tctgccagtccacctgaatatgttgctccacaacctcttgcactttcagatgtaggtatt
gaccaagcagggtccattggtgaagagctagaaacaaagctgtgtgattctgacatcata
cattgtaaccctagttcagaagatcgagcagaacatgtagaatatcagtttaagaaagag
gaaacttcccaaggtggccatagtaatttggaaactgatcagaagctagaggaaattgaa
aacaaagcaaatagtgtgccctctctagaaactttgatggaaaatcacttggagcccctg
aaggtagagtgtgacatgccaagtgaggaacacctgaaggatcattgtcaagtgtacttg
gaagaatcttgtgaaaaactcctaatggagccagataaagtgcccttaacagaacctttt
gatataccatgcaaagcaaccctggaggaactacttgaaggatcctcccatgatccaagt
gaaaaattgttggtaaaagaagcttctggaaaaccccttgaaaattctttagaactagta
gagaatagtccagccaacaccacaatctcctcccacactttgccttcttcatttcctttg
tttaccacttttcccaccccagtaccagaccactgtgtgttcccagaccctgaggctgac
catgacataaaacaggagttactcttgggttcaatagagtcagaggtcaaacccaaaccc
gacagcaccacactgaccccacacctggaacaggctgctgatatggaagtgaaggttgag
atgaaggaaggggaaacaaagacaacagctttattgggagatagttttgttgaggcaaca
cagtttgatccatccatatgcgaggtggcaggcagtcttcatgatccaaaggagccaacc
attgctcggctgctacaagagaaacctcattactcattctccgagtggcccaaggacaga
gttatcatcaaccgcattgacagtatttgtcaagccatcttaaaggggaagtggccttcc
cctagtcatcagtatgaatctcccaactcagtcattaacacctgcatgtccaacagtgcc
cagctaagagcagggtttttaccagcaagaatacctctacctcaagaccttaacttaaac
attccacactcaataccacatatacacaaggaacggttagtaacacctgcatttctttct
gaactcaagcgttctaagtgtcggtttgagtttaacacggaggttcctgttaaaccaatc
gatcttggagaaaaaatccaacttggcatcccccaccatggtggtaccctcctcctaaat
ggttggcaagaagctgccatggatctgtctaacccagctgaaattgcatttagtagggag
gctgaatctatgaggcatgtgacccatgctgttcaatcagcacctcacaagatgcctaac
ctgaactccatggagggcttaatgggattggacatggcgggtattctgcaagcaggactt
gtacaccctgttacagggcagattgttaatggcagccttcgccgtgacgattcaataatg
aggaggaggagaggtcgaaggagaaatgtggaaacacttgaccttggattaatgaaggaa
caagacataaacttaactaaagtgaaggggcagccagagaccgtcaaccaccccattgtg
tcctccacctcctctcagcctgactgcctcacccatccaccttctgccccccctccctca
gagtcattgaccatgagttttgacagagaggcagccagtaaaggcctgatggaatggctc
agacagaacccaagctacagaatggagcttcctgctttttcaatgtctcagactgcaagc
atgttgcacagttttgctgaacgtccgaagcagaggaggcatcgttgtaaagaccctacc
aagttggatgtgaattccctgactggtgaggagagagtcccagtagtgcacaggaacaca
ggtcgcaggctgggtggtgcaatggccccagccataaaggagctttctcaatggctagat
gcaaacttagaatattttgtggctcctgactgggcagatgtggtgaagcattcaggtttc
ctcccagaaggaaagttcacccggattctcactgagccagtgaatcgagatactagcaca
cgtcgtagaggcagaagacctcgcagtgagatgcccaaagctcctgagcttcctgctggc
attggaccactctttatgaatgatgggcttattggcatggacttggttaacttatccaac
ctccgcaatgtccctggtattccaataagcgggctcatgggctttccacctggtttggct
acatccctacagggagaagatactaagaatggcctgagtatgctacctatgatgctccat
agtatgtcaacagtgcaaccacccatgtatggcactcatttaagtggaatgataaaccag
tcactatctgctacagcctccacagtaaccacagctgccagctcctccagcacggcaaca
gtgacttccatatcctctgccactgtggccttaagccctagccctgcagtcagctccagc
acagcaacttctaaagagagagccagccctgagcctagtactgagagacggagtatggat
gagcgaacgttaggagagaatgagaaacaaatgttacctgctgttcccagtcccactgtt
actagcagttctgctagcattacaagcagtgggagccatttgaccttcaacccatttttg
atcccaggaatgcctcatggattactttatcctcatatgttcctgccacatggcagtatt
atggcacttccatcagcatcagatagcactggcattactaagcagaagaaaaagaaaatt
agggatgaaggaagggtggaagaagacagtggtttattggaggtacaggatggggagatg
aaggggacgggggatatagagacactggagagtaatcataaagagggcaggctgaaagaa
tctttgccagctgtggacaccagcaaggtaacaagtaatgatgatagtgatccttcacct
gtggtcaacacagccaaagcagtagaggaaataaaaggagaggtagagaaaacagtagag
tgcagcatgcctgtgccaaaagatgatgacttggatgtaacgcaggatgtgtag
DBGET
integrated database retrieval system
