Ictalurus furcatus (blue catfish): 128622561
Help
Entry
128622561 CDS
T09387
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128622561 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128622561 (ddx46)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128622561 (ddx46)
Spliceosome [BR:
ifu03041
]
Complex A
U2 snRNP components
U2 related factors
128622561 (ddx46)
Complex B
128622561 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
128622561
NCBI-ProteinID:
XP_053505148
LinkDB
All DBs
Position
18:complement(18712329..18726469)
Genome browser
AA seq
1049 aa
AA seq
DB search
MLAKQKQKRRETVVQFTDSMGRESRHYRKRSSSRGRSGSRSKSRSPDSKRVKKEDRARER
GRRERSRSRERRRSRSRDRKRQRRSRSRERKRSRSRERRRSRSRSKGRSKEKSDGGEQSA
DKKKKEEKEEERVEDQDFDQTTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMK
QGKKWSLEDDDDDDEEGPASVDQEGEEDEDKEKDGKVEEAEVMEEEGGEELDPLDAYMEE
VKEEVKKFNMGTMKGGNDKKGGMTVTKVVTVVKTKKIPYITKKKGELMENDQDAMEYSSE
EEEVDLQTALTGFQTKQRKILEPVDHQKIQYESYRKNFYVEVPELTKMTPEEVNEYRLEL
EGILVKGKGCPKPVKTWVQCGTSMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAK
TGSGKTIAFLLPMFRHILDQRPLEEGEGPIATIMTPTRELALQITKECKKFSKPLGLRVV
CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDM
GFEPQVMRIVDNVRPDRQTVMFSATFPRVMEALARRILNKPIEVQVGGRSVVCSDVEQHV
IVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYD
RDSIINDFKSGACRLMVATSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKG
HAYTFITQDQVRYAGDIIKALELSGSSVPPELEQLWATFKEQQKAEGKSIKSSSGFSGKG
FKFDETEHALANERKKLQKAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLAAPGGSA
PSGSGLTVSAAGLGGLTAPSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATNAIMR
GGTMIAPSISAKTIAEQLAEKINAKLNYTPIEKLEEERQNAEQAESVKRYEEELEINDFP
QTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAK
AEITRLIKEELIRLQNSYQPTAKGRYKVL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgaagcagaaacaaaaacgtcgtgaaacagttgtacagtttacagacagtatg
ggacgggagtctcgacattaccggaagcgctcatcgtcacgaggacgctcaggcagtcgc
tctaaaagccgctctcctgactctaagcgagtgaagaaagaggatcgagcacgtgagcgg
ggacgcagggaacgatcacgcagcagagagcggaggagatcacgctccagagaccgcaag
agacagaggcggtctcggagtcgtgagcgtaaacgctccagaagtcgtgagcgcaggaga
tcgaggagccgcagtaaagggcgaagcaaggagaagtcagatggtggtgagcagtcagca
gataagaagaagaaagaggagaaggaagaggagcgagtggaggatcaggactttgaccag
acgacactggaggaggagatgaggaagaggaaggagcgggtagagaaatggagggaggag
cagaggaagaaggccatggagaacattggcgagatcaaaaaggagctcgaagagatgaaa
cagggcaagaagtggagcctggaggatgatgatgatgatgatgaagagggtccggcctca
gtggatcaagagggagaggaggacgaagataaggagaaggacgggaaggtggaggaagca
gaggtgatggaggaggagggaggggaagagcttgaccccctggatgcctacatggaggaa
gtgaaggaggaagtgaagaagttcaacatgggcactatgaagggaggaaacgacaaaaaa
ggaggcatgactgtgacaaaggtggtgacggtggtgaagacgaagaagattccttacatc
accaaaaagaaaggagagttaatggagaatgatcaggatgccatggagtattcgtcagag
gaggaggaagtggacctgcaaacggctctcaccggcttccagaccaaacagcggaaaatt
ctggagcctgttgatcatcagaaaatccagtacgaatcctaccgcaagaatttctacgta
gaagttcctgagctgaccaaaatgacaccggaggaggtgaatgagtatcgtctggagctt
gagggaatcttggtgaaggggaaaggctgtcccaaacccgtaaagacctgggtgcagtgt
ggaacatccatgaaggtcttaaatgcccttaaaaagcataactacgagaagcctacgccc
atccaggctcaggccattcccgccatcatgtccggacgtgacctcatcggcattgccaaa
acaggaagtgggaaaaccatcgcattcctgctgccaatgtttcgccatattttagaccaa
cgacccttagaggagggggaggggcctatcgcgacaatcatgacgccaacacgtgagctc
gctctgcagatcactaaagagtgtaaaaagttctccaagccactggggctcagagtggtg
tgtgtgtacggtggaacaggcatcagcgagcagatagcagagctgaagcgtggagctgaa
atcattgtctgcactcctggtcgaatgatcgacatgctgggagccaacagtggacgagtc
acgaacctgcgcagagtcacatatgtcgtagtcgacgaagctgatcgaatgtttgatatg
ggttttgaaccgcaggtaatgcgcatagtggataatgtgcggccggatcgtcagacagtg
atgttttcagcaacatttcctcgagtgatggaggctttagctcgccgtatcctcaacaaa
ccaatcgaggttcaggttgggggaaggagcgtggtgtgttcagatgtggagcagcatgtg
attgtgattgaggaggagaagaagttcctgaagctgttggagattttgggtcattatcag
gagaaaggctcagtgattatttttgtagataaacaggaacacgcagacggcttgctgaaa
gacctgatgaaggcctcgtacccctgcatgtctctgcatggaggaatcgatcagtatgat
cgggatagtataataaacgattttaagagtggggcgtgtcggctgatggtggccacatcg
gtggcagcgagaggcctggacgtaaagcatctcattctagtggtgaactacaactgtccc
aatcattatgaggactatgtccaccgtgccgggaggactggcagagctggaaataagggc
cacgcatacacgtttatcactcaggatcaggtgcgatatgcaggtgacatcattaaagct
ctggagttgtcagggtcttcagttcctcctgaactcgagcagctttgggctaccttcaag
gagcagcagaaagcggaggggaagagtattaagagcagcagtgggttttcagggaaaggc
tttaagttcgatgagactgaacatgctctggctaacgaaaggaagaaactccagaaagcg
gcgcttggtcttcatgactcagacgacgaggacacagcactggatatagatgagcagatc
gaaagcatgtttaactctaagaagcgtgtgaaggacttggcggctccggggggttctgca
ccgtcaggttcaggactcactgtttctgctgcaggacttggtggtctcactgcaccttca
gctggaaacattcagaaacttgagatcgccaagaaactggcactgaagatcaacgcacag
aaaaacctcggcgcagaagctcaggacgtaatgcaacaggccactaacgccatcatgagg
ggtgggaccatgatcgcaccctccatctccgctaagaccattgccgagcagcttgcagag
aaaatcaatgccaagctgaactacacacccatcgagaaactggaggaggagcgacagaat
gctgaacaggcagagagtgtcaagaggtatgaagaggagctggagatcaacgactttccc
cagacggcgaggtggaaggtgacgtctaaagaggctctgcagaggattggcgaatattca
gaggctgccatcaccatcagagggacatacttccctcctgggaaagagcccaaagaggga
gaacgcaagatttacctcgccatcgagagtgcaaatgagttggcggtgcagaaagcaaaa
gcagaaatcacacggctcatcaaagaagagctcatacgcttgcaaaactcgtaccagccg
acagccaaaggccgatacaaagttctgtag
DBGET
integrated database retrieval system
