Idiomarina loihiensis GSL 199: K734_07645
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Entry
K734_07645 CDS
T02681
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ili
Idiomarina loihiensis GSL 199
Pathway
ili03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ili00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K734_07645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ili03400
]
K734_07645
Enzymes [BR:
ili01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K734_07645
DNA repair and recombination proteins [BR:
ili03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K734_07645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGM36392
LinkDB
All DBs
Position
1630824..1634306
Genome browser
AA seq
1160 aa
AA seq
DB search
MTKASVLRPPFPPAANKDLTWQELHGSSPAMAIARLIDATPGRVLIVTADANQAHRLEQE
VKYFAGEHTEYHDDITLFPDWETLPYDSFSPHQDIISDRLSVLARLPDAKRGALIVSINT
LLHRIAPTSFVQGQALQIEKGQQLDSLKLRQQLENAGYRHVNQVMEHGEFSARGSILDLY
PMGSQTPYRLDFFDDEVDTIRPFDPETQLSKDPIDGINLLPAHEFPLTKTAIERFRANYR
EHFEASTERESVYQQVSKGQLPGGIEYYLPLFFEETASLFDYLPEDTVLVTFGNIQASLE
RLWQDINHRYDQRQFDPLRPLLHPNELFLPVDNIHAGFKQYRRVRANVPAEMAQPGPTPF
LTQAVTEIAADHQQKQPFAKLKTKLEQALTTGDKVLLSAESAGRREALREIVSKLGFQVR
LCSGLDECPTQQIGLIISPIINSFYLPDAKLWFITETELFGNRVVQSRRRQQKATVSADT
LIRNLAELQAGQPVVHLDHGVGRYQGLTTLDAGNVTTEFVTIEYAGGAKLYVPVANLNVL
SRYSGGEESHAPLNKLGNDSWDKAKKRAAEKVRDVAAELLDIYARREAKPGYAFNINEED
YQRFAAGFPFEETIDQQTAIDAVKQDMQQPRAMDRLVCGDVGFGKTEVAMRAAFIAVNEG
KQVMVLVPTTLLAQQHYENFSDRFADQAIRVEVLSRFKTAKQSKGILEDLSNGKVDIVIG
THKLLQDNVKCHDLGLLIVDEEHRFGVRQKDTIKRLRADVDILTLTATPIPRTLNMAMNN
IRDLSIIATPPAKRLAVKTFVREYDEPTVREAILREILRGGQVYFLHNNVDTIEKTAADI
EALVPEARVVVAHGQMRERDLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRAD
HLGLAQMHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAHKRLEAISQLEDLGAGFMLATHD
LEIRGAGELLGDDQSGQIESIGFTLYMDMLEQAVKALKEGKEPALAQLLHERAEIDLKLP
ALLPEAYIPDVNNRLSLYKRIANCETSKELDDLQVELIDRFGLLPDAAKNLIRQTQLRNN
AEQLGIRKIDIGNQGGIIEFADDTKINPEIIIGLIQKAPSYYKLDGPNRLRLSQPLEDTQ
SRLKLVESLLDEFAEQSQAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggcatctgtattaagacccccttttcctccggcagcaaacaaagaccttacc
tggcaggagttgcatggcagctcgccggcaatggcgatagcgaggctaattgacgccacg
ccagggcgggttttaattgtcaccgcagatgctaaccaggcacaccggttagaacaggaa
gtgaaatactttgccggtgagcacaccgaataccatgacgacattacgctttttcccgac
tgggaaactttgccttacgacagcttttcgccgcatcaggacattatttctgaccgactc
agtgtgctggcacgccttcctgatgcaaagcgcggcgcactgattgtcagcattaatacc
ctgctgcaccgaattgctccaacctcttttgtgcaggggcaagcgttacaaattgaaaaa
ggccagcaactcgatagcctgaagctgcgccagcaacttgagaatgccggttaccgtcat
gttaatcaagtaatggagcatggcgagttcagtgcccgcggctctatcttagacttatac
cctatgggcagccagacaccttaccgactcgacttttttgacgacgaagtcgataccatt
cggccgtttgaccctgagactcagctatcaaaagatccaatagacggcattaacttgctg
cccgcacacgagtttccactgacaaaaacggcaattgaacgctttcgcgcaaattaccgt
gagcactttgaggcgagcactgagcgtgaatcggtgtatcaacaagtcagtaaaggccag
ttacctggtggtatagagtactatctgccgttattttttgaagaaactgccagcttgttt
gattaccttcccgaagacacggtattggttactttcggcaacattcaggcgagcctggaa
cgactgtggcaggatattaaccaccgctacgatcagcgtcagtttgaccctttacggccg
ttactgcaccccaatgagctgtttcttccggtcgataatattcacgccggtttcaaacaa
tatcgtcgggtacgggccaatgtaccggcagaaatggcccaacccggtccgacgccattt
ttgacacaggctgtaacggaaattgcagctgaccatcagcaaaagcaaccctttgccaag
ttaaagaccaaactggaacaggctttgacaacgggtgacaaagttctgctgtcagccgag
agcgcaggccgccgcgaagccttacgggaaattgtcagcaagcttggttttcaggtaaga
ctttgctcggggctggatgaatgcccaacccaacaaattgggttaatcattagccccatt
attaattcattttatttaccagacgccaaactttggtttattaccgaaaccgaattattt
ggtaatcgagtggtgcaaagccgtcgacgtcagcaaaaagccactgtcagtgccgataca
ctgattcgcaatttagcagaactgcaagccggtcagcccgttgttcacctggaccacggt
gttggtcgttatcaagggctgacaactttagatgccggaaatgtcaccaccgaatttgtt
accattgagtacgcaggtggcgcaaaactttatgttccggtagcaaacctgaacgtttta
agccgctacagtggcggtgaagaaagccatgcgccgttaaacaaactggggaacgacagc
tgggacaaggccaaaaaacgtgctgcggaaaaagtccgtgatgttgcggctgaactgctc
gacatttacgctcgccgtgaagcgaaacccggctatgcatttaacattaacgaagaagat
taccaacgttttgccgccggctttccgtttgaagaaaccattgaccaacagactgcaatt
gatgcggttaagcaggacatgcaacagccccgcgctatggacagactggtttgcggcgac
gtgggctttggtaaaactgaagtggccatgcgcgcggcctttattgcagttaatgaaggt
aaacaagtaatggtgctggttcctaccaccctacttgcccagcaacactacgaaaacttc
agtgaccgttttgctgatcaggccattcgggttgaagtgctgtcgcgctttaaaaccgcc
aagcagtcaaaaggcattcttgaagacttatccaacggcaaagtcgacattgttattggt
acccacaagttactgcaagacaatgttaagtgtcatgacttaggtctgcttattgtcgac
gaagaacaccgctttggtgtaagacaaaaagatacaattaaacgcctgcgcgctgacgta
gatattctgacgctaaccgcaacaccgattccgcgtaccctgaatatggccatgaacaac
attcgtgacctttcaattatagccacgccaccagctaagcgactggcagtaaaaaccttt
gtccgcgaatacgacgagccaacggttcgtgaggcaatattgcgtgagattctgcgcggt
ggtcaggtttatttcttacacaacaatgtcgacaccattgaaaaaactgcggccgatatt
gaagctctggttccggaagcgcgggttgtggttgctcacggacagatgcgtgaacgtgac
cttgagcgcattatgtcggacttctaccatcagcggtttaacgtgctggtctgtaccacc
attattgaaaccggtatcgacatacccagcgccaacaccattattatggatcgcgccgat
cacctgggtctggcgcagatgcaccagctgcggggccgggtcggacgttcgcatcatcag
gcttacgcctatttattgacgccacaccccaaacgcatgaccaaagacgcacacaagcgc
ctcgaagcgatttctcagctggaagacctgggtgccggctttatgcttgcaactcacgac
ctggaaattcgtggtgccggcgagctgctgggcgatgatcagagtggtcagattgaaagc
attggctttactttatacatggacatgctggagcaagcggttaaagctttaaaagaaggc
aaagaacccgcgcttgcgcaactgctacacgaacgtgctgaaattgacctgaaactgccg
gcacttttacctgaagcttacataccagacgtcaataatcgtttaagtttgtataagcga
atagccaactgcgaaacaagcaaagagcttgatgatctgcaagtagaattgattgatcgt
tttggcctgttaccggacgccgcaaaaaacctgattcggcagacacaacttcgcaataat
gcggaacagttaggtatacgcaaaattgatattggtaatcagggcggtattattgagttt
gccgacgacacgaaaattaaccccgagataattattgggttaattcaaaaagcgcccagc
tattataagctggacgggccgaatcgtttacgtttgagtcaaccactggaagatactcaa
agccgcttaaaactggtagagtctctgctagacgagtttgcagagcaatctcaggcggcg
taa
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