Idiomarina loihiensis GSL 199: K734_12735
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Entry
K734_12735 CDS
T02681
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V) beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ili
Idiomarina loihiensis GSL 199
Pathway
ili03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ili00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K734_12735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ili03400
]
K734_12735
Enzymes [BR:
ili01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K734_12735
DNA repair and recombination proteins [BR:
ili03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K734_12735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_12
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGM37406
LinkDB
All DBs
Position
complement(2708808..2712533)
Genome browser
AA seq
1241 aa
AA seq
DB search
MSQLSSHNSGHTLGHKLDNPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGA
EETAFDRELVPKNILVMTFTKAATEELSDRIRARLAEAAAYFRDPEAVEGDPFLASLRED
CAAQGQNLMHLARLLDLASQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEEL
RLQAAGDYFRRFIYPADAELSARLLEDFKSPETLLGLTYSLSKSGQAPIDGDLHSLLNEA
ESAHQQRMVAIKQEVAPIVQELVDKTSQAKGAATKLKQFQKFADWCGDPDLVEPEATAAN
WKNISTDELQKFADAKLGDMPQSWAVLGELQERIKRSKVQQQEELAKVKQHAAFWVSNRF
AELQNQRAEMGHDDMLTRLRDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNR
IYNLADPHPGTGIFLIGDPKQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVD
GVNALFERAEELPRGAFLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSV
SGEEKRNKDTFFRAAANHHANLIASLLNDPQAGYYDGDDKLEQRVKTSDIAVLVNNFNEA
NAIKKALSDRGLKSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQILGLP
LSELEHIHSHEREWEQRVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLEDRIHGERQ
LSDVLHIAELLQQQSLVLDGIPALVNHFAEQVNERHGFGSNSRTQSDEQQLRLESDDELI
KIITIHKSKGLQYPLVFMPFVAYTQAEAYRIKPPAVYHDENGELQVLWSKDDDNKQRLSN
EILAEDLRKMYVAVTRAQYATFIALEAVKEHRNNPLFYLLNGGESLTDELYTEVNERWQQ
APHTQLTRLEDDEPLVRALEQEQTTPKLTPRSMPADRKLERWWVASYSALKYEGAVTKSV
QAPQSPDEMNLLDERDDDEAEVASAAEPSPDSIHHLPKGAGPGTFLHNLLEESANIGFAQ
IAGDAAERAELVQGFCVSPYWQEHQNSLEHWLDAYLHNEFPINDSGESVSLSALEQYKAE
PEFWFGASEVNAQRLDALVREHILPGHERPALEPNVLNGMLKGFIDLVFEHNGKYYVADY
KSNWLGEDDHAYTEQAMREKILHSRYDLQYVIYTLALHRLLKARLGSDYDYDTHVGGAVY
LFLRGHRAETGGAFCDRPPRKLIEQLDTLFAGKNLSDKEPV
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagccagttgtcgtcacataactcagggcatacgttagggcataagttagataatccg
ctcgactttccgctgaacagcagtcgcttaattgaggccagtgccggtaccggaaaaacc
tacactattgctgcgctttatgtgcgtttggttatcggtcacggttcgcataatggtgca
gaggaaaccgcgtttgaccgcgaactggtgccgaaaaacattctggtcatgacctttacc
aaagctgccaccgaagagctgagtgatcgtattcgcgcgcgattggcggaagctgctgcc
tattttcgtgatccggaagccgtagaaggtgaccccttcttagccagtctgcgggaagac
tgtgcagcgcaggggcaaaacctgatgcatctggcgcggctgttggatttagcctcgcag
tcaatggacgaagcggcagtgaaaaccattcatggttggtgccagtccatgctaaaagag
cacgcttttgccagcggcagtttgttcagtcaggacgttgaaaccgacaacgaagagctg
cgtttgcaggccgccggagactacttccgccgctttatttatccggccgatgccgaactc
agtgcccggttgctggaagactttaagtcaccggaaaccttgttagggctcacttacagc
ttaagtaaaagcggacaggcaccgattgatggtgacttgcacagcttgctgaacgaagct
gaaagcgcccatcagcaacgaatggttgctataaagcaggaagttgctcctattgtgcag
gaattggttgataaaacctcgcaagctaaaggcgcggcaaccaaacttaagcagtttcag
aaatttgcggactggtgcggcgaccctgacctggttgagcccgaagccaccgcggcaaac
tggaaaaacattagcaccgacgagttacagaagttcgccgatgccaaacttggcgatatg
ccccaaagctgggcggtgttaggcgagctgcaggaacgtattaagcgcagcaaagtacag
cagcaggaagagttggctaaagtaaaacaacacgccgctttctgggtgagcaaccgcttt
gccgagttgcaaaaccagcgcgccgaaatgggccacgacgacatgctgacgcgtttacgt
gacgcgttgaaaggacccagcggtgaagccttagctgcggctattcgcaagcagtatccg
gtggctatggtggacgagtttcaggacaccgacccggtgcagtacgagatttttaaccgc
atttataacctggcggacccgcacccgggtaccggtattttcctgattggtgaccccaaa
caggccatttacagcttccgtaacgccgatatttatacctatttaaaagcccggcgcgat
accgaaggccggcattataatctggcgcggaactttcgctcgtcgcaggccatggtggat
ggcgttaatgcgctgtttgagcgcgctgaagagctgccgcgcggtgcttttctgtttaaa
accgaagcagaaaaccagctgccctttaacccggtgggtgcaaatgggctgaagcgcact
ttcaagcattgcctgttatccagtaatttaaaaaccgcgccggcgctgctgtggtcggtg
tccggtgaagaaaagcgcaataaagacacgtttttccgcgctgccgcaaaccaccacgct
aacttgatagcctccctgcttaatgacccgcaggcggggtattacgacggtgacgataag
ctggaacagcgtgtcaaaaccagtgacattgcggtgctggtaaacaactttaacgaagcc
aatgccattaaaaaggcgctgagcgatcgcgggctgaaaagcgtttatttatcggacaga
gaatcggtatttgcccagcgcgtagcgaaagatttgctggcgctggtgagtgcctgcgcc
gagccgcgcgacccgtcgctgatacgcagtgctctggctactcagatactcggcttgccg
ctgagcgagctggagcatattcacagccacgaacgcgagtgggaacagcgggtagagcag
tttttaagttatcacgaccagtggcagcgacagggggtactggccatgttgcacagcctg
ctgcatgaccatcaggtgcccgcgaagctacttgaagaccgtattcatggcgaacggcaa
ctgtccgacgtgctgcacattgccgagctgctgcaacagcagagcctggtactggacggc
attccggcgctggtgaaccattttgccgagcaggtgaacgaacgccacggctttggcagc
aacagccgtacccagagcgacgagcagcaactgcgcttagaaagcgacgacgaactgata
aaaatcatcaccattcataagtcgaaaggcctgcagtacccgctggtgttcatgcccttt
gtggcgtacacccaggccgaagcctaccggataaaaccaccggcggtgtaccacgatgaa
aacggtgagctacaggtattgtggtcaaaagacgacgacaataagcagcgtttaagtaat
gagatcctcgcggaagacttacgcaaaatgtacgtggcggtgacccgcgcgcaatacgcc
acttttattgcgctggaagctgtgaaagagcatcgcaacaacccgttgttttatttgttg
aacggcggtgagtcactaaccgatgagctttacaccgaagtcaacgagcgttggcaacag
gcaccgcacacacaattaactcggttggaagacgacgagcctttagttcgtgcgctggag
caggaacaaacaacgccgaagctgacaccacgcagcatgcccgcagaccgcaagctggaa
cgctggtgggtagccagttacagcgcgctgaagtacgaaggtgccgtgacaaaaagcgtg
caggcaccgcagtcgccagacgaaatgaacctgttggacgagcgcgacgatgacgaagcg
gaagtcgccagtgccgcggagccaagtccggacagcattcatcacttacccaaaggcgcg
gggccgggtacgttcctgcataacctactggaagagtcggccaatatcggctttgcgcaa
atagcgggtgacgctgccgagcgcgctgagctggtacaaggcttttgtgtcagcccttat
tggcaggaacaccaaaacagcctggagcactggctggacgcctatttgcacaacgaattc
cccattaatgacagtggtgaaagcgtgagcttaagcgcactggagcaatacaaagctgag
ccggaattctggtttggtgccagtgaagttaacgcacaaagactggatgctctggttcgc
gaacatattctgccggggcatgaacgcccggcgctggaacccaatgtgctgaacggcatg
ctcaaaggctttatcgacttggtgtttgagcacaacggcaaatactacgtggcagattat
aagtccaactggctgggcgaagacgaccacgcttacaccgaacaagccatgcgcgagaaa
attctgcacagccgttatgacctgcaatacgtcatttacaccctggcactgcatcgcttg
ctaaaagcgcggctaggcagtgactacgactatgacacccatgtaggtggtgccgtatat
ctgtttttgcgtgggcaccgggcggagaccggcggggcattttgtgaccggccgccacgg
aagttaatagagcagctggacacactttttgcgggtaagaacctttcagataaggagccg
gtatga
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