Ipomoea nil (Japanese morning glory): 109146768
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Entry
109146768 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109146768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109146768
03041 Spliceosome [BR:
ini03041
]
109146768
03009 Ribosome biogenesis [BR:
ini03009
]
109146768
03016 Transfer RNA biogenesis [BR:
ini03016
]
109146768
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109146768
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109146768
Spliceosome [BR:
ini03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109146768
Complex C
U4/U6.U5 tri-SnRNP related factors
109146768
Ribosome biogenesis [BR:
ini03009
]
Eukaryotic type
Pre-60S particles
Helicases
109146768
Transfer RNA biogenesis [BR:
ini03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109146768
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
109146768
NCBI-ProteinID:
XP_019149965
LinkDB
All DBs
Position
Un
AA seq
1000 aa
AA seq
DB search
MEVKAEELSSTVVKRKSAEESSTGAEVPKEESAPKRRNLTRTCVHEVAVPSGYSSCKDES
VHGTLGNPVYNGEMAKNYPFKLDPFQEVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA
FRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICN
LHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDETEKFREDNFVKVQDTFVKQHPANG
SKSMNAKSSGRIARGGNASGVSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLD
FNTQEEKADVENVFRSAVLCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELL
FQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYVGSGEYIQMSGRAGRRGKD
ERGICIIMIDEQMEMNTLKDMVLGKPAPLLSTFRLSYYTILNLMSRAEGQFTAEHVIKNS
FHQFQYEKALPDIGKKVSKLEQEAAMLDASGEAEVAEYHKLKLEISQLEKKMMAEITRPE
RVLYFLLPGRLVKVREGGKDWGWGVVVNVVKKPPTASGSLPAALSASRGSTYIVDTLLHC
SLGSSENGSRPKPCLPIPGEKGEMHVVPVQLPLISALSKLRISVPPDLRPLEARQSILLA
VQELEKRFPQGLPKLNPVKDMGIEDPEFVDMMSQIEELEKKLFAHPLHKSQDEHQLKSFQ
RKAEVNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTG
DELLVTELMFNGTFNDLDDHQIAALASCFIPGDRSNEQIQLRAELAKPLQQLQESARRIA
EIQHECKLEVNVDEYVEASVRPYLMDVIYCWSKGASFAEVIQMTDVFEGSIIRLVRRLDE
FLNQLKAAAHAVGEVGLENKFTAASESLRRGIMFANSLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaaagcagaagaattgtcatcaacagtggttaaaaggaaatctgcagaggaa
agttcaactggtgcagaagttccaaaggaagaatcagccccgaaaaggcgcaatttgact
cgaacatgtgtgcatgaggtggcagttccaagtgggtattcctcatgtaaggatgaatct
gttcatgggactcttgggaatcctgtttataatggagagatggcaaaaaactacccattt
aagcttgatccatttcaagaagtttctgtcgcatgcttggaacggaatgagtcagttttg
gtctcagcacatacatctgctggaaagacagcagttgcagagtatgctattgcaatggca
tttagggacaaacaaagggttatatatacttcaccattgaaagcattgagcaatcaaaaa
tatagagagttgagtcaagagttttctgatgttggtttaatgacaggtgatgttacactt
tcaccaaatgcaagctgtttggtgatgaccacagagatcctaagagggatgctctatagg
ggttctgaggtgttgaaggaggttgcttgggttatatttgatgaaattcactacatgaaa
gatcgtgagagaggcgttgtttgggaagagagtataatcttcttgccgccagctattaag
atggtttttctttctgctacgatgtcaaatgccactgagtttgctgaatggatatgtaat
ttgcataagcagccatgccatgtggtttacaccgatttccgccctaccccattacagcat
tatgtgtttccggtgggcggttctggattgtatcttgtagttgatgagactgagaagttt
agggaggacaattttgtgaaagtacaggatactttcgtcaagcagcatccagcaaatgga
agcaagagtatgaatgccaagtcaagtggcagaattgcaagaggtgggaatgcttctggt
gtctctgacatatacaaaattgtcaagatgattatggaacggaaatttcaaccagtcata
attttcagttttagtagaagagaatgtgaacagcatgcaatgtctatgtccaaacttgat
ttcaatacacaagaggagaaggctgatgttgaaaatgtattccggagtgcagtgctctgc
ttgagtgaggaagatagaaacctacctgccattgaacttatgctgcccctgcttcaacgt
gggattgctgtgcaccattctggcctgcttcctattatcaaggaacttgtagaacttctg
ttccaagaaggacttgttaaggctctatttgccactgagacgtttgcaatgggattgaat
atgcctgcaaaaactgtagtttttactagtgtcaaaaaatgggatggtgatagtcatcga
tacgttggatctggtgagtatatccagatgagtggaagagctggacgccgtggcaaagat
gagcgtggtatttgtatcataatgattgatgagcagatggagatgaatactctcaaggat
atggttttggggaaaccagcaccactgctcagcacatttaggcttagttactacacaatt
ttgaatttaatgagtcgtgctgaaggccaatttactgccgagcatgttatcaagaactct
tttcaccagttccagtatgagaaggccttacctgatatagggaaaaaggtttccaagcta
gaacaagaagctgctatgcttgatgcctcaggggaggctgaagtagctgaatatcataag
ctaaagcttgagatatcacaacttgaaaagaaaatgatggctgaaataacacgacctgaa
agggttctctatttcctactgcctggtagactggttaaggttcgggagggcggaaaggat
tggggttggggggtggttgtcaatgtggttaaaaagcccccaacagcatcaggttctttg
cctgctgcactttctgcttcgcgtggtagtacctatatcgtggatacattactccactgt
tcccttggctccagtgaaaatggttctcgacccaaaccatgtcttcccattcctggagaa
aagggtgaaatgcatgtggttcctgttcaactgcctctgatatctgcactcagcaaactg
agaatatctgttcctcctgatctccggccgcttgaagcaaggcaaagcatcctgcttgct
gtacaggagcttgaaaaacgttttcctcaaggcctccctaagcttaatcctgtgaaggac
atgggcatagaagatcctgaatttgttgatatgatgagccaaatagaggaactggagaaa
aagttgtttgctcaccctttgcacaagtcacaagatgagcatcagcttaagtctttccag
aggaaggctgaggttaaccatgaaattcaacagctcaagtcaaaaatgcgtgattcacag
cttcaaaaatttagggatgaacttaaaaatcgctcccgggtactgaaaaaactgggtcat
attgatgctgatggtgttgtccaattgaaaggaagagcagcatgcttgatagacacagga
gatgaactccttgttactgaactaatgtttaatggtactttcaatgatcttgacgaccat
caaattgcggctctggcaagttgcttcatcccaggggacaggtcaaatgaacagattcag
ttaagagctgaacttgctaaaccattacaacagctacaagagagtgcaagaagaatagca
gagatccaacatgaatgcaagttggaagtaaacgtggatgaatatgtggaggcttctgtt
cgaccatatttgatggatgttatttattgttggtcaaagggagcatcgtttgcagaggtt
atacaaatgactgatgtctttgaaggcagcataatacggctagttagaaggcttgatgaa
tttctgaaccagttgaaggctgctgcccacgcagtaggagaagttggtttggagaacaag
ttcaccgcagccagtgaaagcctaagacgaggaattatgtttgcaaattctttgtacctc
tga
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