Ipomoea nil (Japanese morning glory): 109148474
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Entry
109148474 CDS
T04663
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03013
Nucleocytoplasmic transport
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109148474
09122 Translation
03013 Nucleocytoplasmic transport
109148474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109148474
03041 Spliceosome [BR:
ini03041
]
109148474
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109148474
Spliceosome [BR:
ini03041
]
Complex C
Other components
EJC/TREX
109148474
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109148474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Haemadin
Motif
Other DBs
NCBI-GeneID:
109148474
NCBI-ProteinID:
XP_019151768
LinkDB
All DBs
Position
Un
AA seq
614 aa
AA seq
DB search
MDLFRKAILHPGLPEEFALQTVQEAIKPQRQTKLVQDENQLLENILRSLLQELVSAAVQA
GQKIMQYGQSIDDGESSQGQIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMKNCED
IFGYIESKQDILGKAELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEAPEGISIDFNFYKTFWSLQECFCNPPSLSLAPAKWHKFT
SSLMPISDEEGNANYLEDEAAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLILFDYLKA
PGKSDKELPSEAMKEEIKTCEERVKKLLEITPPKGKEFLRSIEHILQRERNWVWWKRDGC
PPFEKQQIEKKLAQGGQKKRRQRWRLGNKELSQLWKWSDQNPNALTDPQRVRTPVISDYW
KPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEHGIEGVVPVELLPP
EVRSKYQGKPSDRSKRAKEETKTSVQQAEENQVATPASEVCIEGGKADLETSATPMDTDA
TGNISQSGTPTPDENQKQSSDTDVGQEAGQIEADAETQQIEADVEAEAEAEAEAEAGTID
GETGDADADLDAVG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttaggaaggctattcttcacccgggactccccgaagaattcgctctccag
actgtgcaagaagctatcaaacctcagaggcaaaccaaattagtccaggatgagaatcag
ctactggagaatattttgagatctctactccaagaattggtgtctgctgctgttcaggca
gggcagaaaatcatgcagtatgggcagtcaattgatgatggtgaaagcagtcagggtcaa
attccacgacttcttgacattgtactatatctttgtgagaaagaacatattgaaggtggc
atgatatttcagcttttagaagatttgacagaaatgtccaccatgaaaaattgtgaagat
atatttgggtacattgaaagtaaacaagatatattggggaaggcagaactatttgcacga
ggaaaacttgtgatgttaaggacatgcaatcaacttcttcgtcggctgtcaaaggcaaat
gatgttgtgttctgtggaagaatcatcatgtttcttgctcacttttttccactatctgaa
cgctccgctgttaatataaagggagtattcaatacatcaaatgagacaaagtatgagaag
gaagctcctgaaggtatttcaattgatttcaacttctacaaaaccttttggagtttacag
gagtgcttttgcaacccaccgtctctatctcttgcccctgccaagtggcataaatttact
tctagtttaatgcctataagtgatgaagagggcaatgcaaattaccttgaggatgaggca
gctgcattcaacataaaatatcttacaagcagtaaattaatggggcttgagttgaaggat
cccagtttccgacgtcacattctggttcagtgcctcattttatttgattatctcaaggcc
ccaggaaaaagtgataaagaattgccatctgaagccatgaaggaagaaataaagacttgt
gaagagcgggtgaaaaagctacttgaaattactccacctaaaggaaaagaatttctccgg
tctattgagcatatattacagcgtgaaaggaattgggtttggtggaaacgtgatggttgc
cctccatttgaaaaacaacagattgaaaagaagctagctcaaggtggacaaaagaaacgt
cgacaacggtggaggcttggaaataaagaactctctcagctatggaagtggtctgatcag
aatccgaatgctttaactgatcctcaacgtgtgcgcactcctgttatctcagactactgg
aagcccttggctgaagatatggacgaatctgctggaattgaagcagaatatcatcacaaa
aataatcgggtttattgttggaaaggtctccggttttctgctagacaggatttggaagga
ttttctcgatttacagaacatggtattgagggtgttgtgcctgtggaacttttgcctcca
gaggtgcggtcaaaatatcaaggtaaaccaagtgataggtccaagcgtgccaaggaggaa
acaaaaacttcagtgcaacaagcagaagaaaatcaggtcgcaacacctgctagtgaggta
tgcatcgaaggcggcaaggctgaccttgaaacctctgctactccaatggacacagatgct
accgggaacatttctcaaagtggaactccaacaccagacgaaaatcagaagcaaagttct
gacacagatgttggtcaggaagcagggcagatagaagctgatgcagaaacacagcagatt
gaagcagatgtagaagcagaagcagaagcagaggcagaagcagaagcaggaaccatcgat
ggagaaactggtgacgctgacgctgatttagatgcagttggctga
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