Ipomoea nil (Japanese morning glory): 109164904
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Entry
109164904 CDS
T04663
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03013
Nucleocytoplasmic transport
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109164904
03015 mRNA surveillance pathway
109164904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109164904
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109164904
mRNA cycle factors
P-body specific factors
109164904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
109164904
NCBI-ProteinID:
XP_019169003
LinkDB
All DBs
Position
Un
AA seq
510 aa
AA seq
DB search
MKGPLDRTKIVLRHLPPALPRSTLSEQIDSRFSGRYHWLSFRPGKTSQKHQPYSRAYINF
KTPEDVVEFAEFFNGHVFVNEKGSQFKTIVEYAPLQRAPRQWSKKDGREGAILKDPEYLE
FLEFIGKPVEYLPSAEIQLERKEAERSGAAKDAPIVTPLMHYVRQKRAAKSGARRVSNGK
STRRVGGASTGSPSSSASKRGSEKRRNSTKMYVQRDSSKVEGSKDRAYILVRKHDDKQLV
DKSGTSASAVSEESGVSVSADSGKKKILLLKGKEKEIPDISLGASLQQNVASHLKNSLTS
SAPKPNQRREANGRIIRSILLKDARQNQSSYTAQSEQQVPEREKRPPRPPSVQLSQRDCN
GLPEDKIAGNDSLGVHVDKMEKRTRSRDRPDRGVWTPLRRPDNSHASDEYLSSSTSQSTH
AQDSAEGSLVEVKNGLSARGGEFKPTGSGRSSHSSVDNGTYRYSGRRGTAHNTKDADGTS
FGEGRPSRRGGPGYGTHEKQVWVQKSSSGS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcccgttagatcgaacgaagattgtgctgcggcacttgccgccggcgcttccc
cgttctacgctgtctgagcaaattgattctcgcttttctggtcgctaccactggctctcc
tttcggcctgggaaaaccagccaaaaacatcaaccttattcaagagcatatattaacttt
aagacacctgaagatgttgttgagtttgcagagttctttaatggacatgtctttgttaac
gagaaagggtctcagttcaaaacaattgttgagtatgcccctttacagcgtgctccaagg
cagtggtctaagaaagatggccgtgaaggggctatcttgaaagatcctgaatatctggag
ttcctagaatttattggaaagcctgttgagtatcttcctagtgcagaaattcagttggaa
agaaaggaagctgaacgttcaggtgctgctaaggatgcccctatagttactcccttaatg
cattatgtgcgtcagaaacgagctgcaaaaagtggggctcggagggtatctaatggaaaa
tcaaccagaagggttggaggagcatcaacaggaagtcctagctctagtgcatctaagcga
ggctcagaaaagaggagaaattctacaaaaatgtatgttcaacgggacagttccaaggtt
gaaggtagcaaggacagagcatacattctagttcgaaaacatgatgacaaacaacttgtt
gacaaatctggtacttcagcttctgcagtgtcagaggaaagtggagtttctgtttcagct
gatagtgggaagaagaaaatcctgctcttgaagggaaaagaaaaagaaattcctgatatt
tctcttggtgcatcactgcagcagaatgttgcatctcatctcaagaattcacttacttca
tctgctcctaagccaaatcagaggcgtgaggccaatggaaggatcatcagaagtatactt
ctcaaggatgctcgccagaatcagtcatcatatactgctcaatcagaacagcaagtccca
gagagggagaaaagacctcctaggccaccaagtgttcaattgtctcagagggattgtaat
ggattacctgaggataagattgctgggaatgattcactcggtgtccatgtggataagatg
gaaaaacgtacaaggagtagggataggccagatcgtggtgtctggactccacttcgacgt
cctgataattcacatgcaagtgatgaatatttgtcatcatctacctctcaatctacccac
gctcaagattctgctgaaggaagtcttgtggaagtgaaaaatggactaagtgcacgtggt
ggagagttcaaacccactggaagtggacgaagttctcattcttctgttgataatggtact
tacagatatagtggtcgtcgtggaacagcacataatacaaaagatgctgatggcacctca
tttggggaagggcgaccctcaagaagaggaggtcctggatatggtacccatgagaaacaa
gtatgggtccaaaagtcaagttctggttcttaa
DBGET
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