Ipomoea nil (Japanese morning glory): 109173774
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Entry
109173774 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109173774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109173774
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109173774
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109173774
mRNA degradation factors
3'-5' decay
Ski complex
109173774
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
Ski2_N
MTR4-like_stalk
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
109173774
NCBI-ProteinID:
XP_019178617
LinkDB
All DBs
Position
Un
AA seq
1356 aa
AA seq
DB search
MDRIEAAKELPFRVGFTGHSGHLTIEPLPPVERPKPLDSLPFVLPPAFPDETPETIQQYI
KDKYLLPQLDADEFTPEKMGRQWEFDWFDRAKILPEPSLPRTIIVPKWEPPFRRPKNPPG
GRWEPESVEIDVSELTAGAEDLGALPQITGPPKDFVRGSINNRPFRPGGLDGSSSLGRAL
PDGASSGKWVREVLDGGYPQTIPPGFKKGLDLGDLELHSSSWNVYEDQSAVNSTSSKKLN
EFSVQFDELFKKAWEEDMTEYVEDGHSSGLQAEVKEEISVKLESLEIDTEVNTPEVAGEV
TVTEKSVLDEILAAASGASALRLGGERDGSGQEQTEAWAVTGDNKEVVERFYDLIPDMAL
TFPFQLDPFQKEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTI
SNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH
YVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVP
LEHCLFYSGELYKACENEQFVPQGFKAAKDVFKKKNASSAIGGTGAFHGSSSAANDRSRG
QRRDNFSHGKHPKGSQTSGNVGSSWGNKNSGGQNFIGRRSEASLWLSLINKLSKKSLLPV
VIFCFSKTRCDKSADNLPGTDLTTSSEKSEIRIFCDKAFSRLKGSDRNLPQIVRIQSLLR
RGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVAFDQLRKFDGKEF
RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPEERDLKNVMVGSATKLESQFRLTYI
MILHLLRVEELKVEDMLKRSFAEFHAQKKLPERQQLLMRKRAQPKKSVECIKGEPAIEEY
FDMYSEAEMYSKRISESVMQSPVAQQYLNAGRVVVVRSQQGQDHLLGVVVKTPASNNKQY
IVLVLTPELPSTVQSQSGTGKPNDKKGPDFQILVPKSKRGLDDEYNTSVTSRKGSGIINI
KLPHHGNAAGVNYEVRGVENKEFLCICNVKIKIDQVRLLEDVSAGAYSYTVQQLLGLKSQ
GNKYPPALDPVRDLKLKDVDLVEAYYKWSNLLQKMAQNKCHGCVKLDENIKLAGEMKRHK
EELERLEFQMSDEALQQMPDFLGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTE
CLFENQMDDLEPEEAVAIMSAFVFQQKESKAPSLTPKLTQARKRLYDTAIRLGELQTQFK
LQIEPKEYAEENLKFGLVEVVYEWAKGTPFADICELTDVPEGVIVRTIVRLDETCREFKN
AAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatagaggcggcaaaggagctacctttcagggtcgggttcacgggccatagc
ggtcaccttacaatcgagcctctcccgccggtcgaacgccccaagcctctcgattcgctg
cctttcgttcttcctcctgcattcccggatgaaactcctgaaacaatacaacaatatata
aaagataaatatctcttacctcagttggatgctgatgagttcacccctgaaaaaatggga
aggcagtgggaatttgattggtttgacagagctaaaatccttccagagccttctctgcct
cgaactattattgttccaaaatgggaaccacctttcaggcgtccaaaaaacccaccaggt
ggacgatgggagccagagtctgtggagatagatgtatcggaacttacagcaggagctgag
gatttgggggctttgccacaaattactggacctccaaaagattttgttagaggaagtatc
aataaccgaccttttcgtcctggggggttggatggttcttcttctctgggaagggctctt
cctgatggtgcttccagtggcaaatgggtgcgtgaggtgcttgatggtggttacccccaa
accattcctccaggcttcaaaaagggactagatcttggtgatctcgagttgcattcatct
tcatggaatgtttacgaggatcagagtgcagtcaatagcacatccagcaagaagctgaat
gaattttccgtgcagtttgatgaattatttaagaaagcttgggaagaagacatgacagaa
tatgttgaagatggtcattcttccgggttgcaagctgaagtgaaagaagaaatttctgtc
aaattagaatcacttgaaatagatactgaagtaaacacgccagaagttgctggtgaagtt
acagtgactgaaaaatcagttttggatgagattttggctgctgcatctggagcttcagct
ttaagattgggtggagaaagagatggtagtggacaagaacaaacagaggcatgggctgta
accggagacaacaaggaggttgtggaacgattttatgatcttattcctgatatggcacta
accttcccattccaacttgatccctttcaaaaggaggccatctactatcttgaaaggggg
gagtctgtttttgttgctgctcatacatcagcgggaaagacagttgtagcagaatatgca
tttgctttggcatccaaacactgcaccagagctgtttacactgctccaataaaaactatc
agcaatcagaagtacagggacttctgcgggaaatttgacgttggccttcttactggagat
gtcagcttgcggcctgaggcctcatgtctcatcatgactactgagatattgaggtctatg
ctctatagaggtgctgatatcattcgtgatatagaatgggttatatttgatgaagtgcat
tatgtcaatgatgttgaaagaggtgttgtttgggaagaagttattatcatgctaccaagg
cacatcaattttgtacttctgtctgcaacggtaccaaacacaattgaatttgctgactgg
attggcaggacaaaacaaaagaaaattcgtgtgacagggacaaccaaaaggccagtccct
ttggaacattgcctcttctactctggagagctgtacaaggcgtgcgagaatgaacagttt
gtgcctcagggatttaaagcagccaaagatgtatttaagaagaaaaacgcaagttctgcc
attggtggcactggagctttccatggatcgtcttcagctgctaatgatagatctcggggt
cagagacgtgataacttttctcatggaaaacaccccaaaggatcccaaacttcagggaat
gttggtagtagctggggaaacaagaatagtggtggccagaattttatcgggaggaggtca
gaagcatccttgtggttgtcactcattaataaactgtcaaagaaatctctcttaccggtg
gttattttttgcttttcaaagacaagatgtgataagtctgctgataacctccctgggact
gatctcacaactagctccgagaaaagtgagattcgcatcttctgtgacaaagctttttca
cggcttaagggatctgatagaaacttaccacagattgtcagaattcaaagtcttttgcgg
aggggaattggagtgcatcatgcagggctactaccgattgtaaaggaagttgttgaaatg
cttttttgccgtggtgtagtgaaggttcttttttcaacagagacatttgcaatgggagtt
aatgccccggctaggacagttgcgtttgatcaattaaggaagtttgatggcaaggaattc
agacaattacttcctggagagtatactcagatggctggccgtgctggaaggagaggactg
gataaaatcggtacagtagttgtgttgtgtcgtgatgaaatccctgaagagagggatttg
aagaatgttatggttggtagtgcaactaagcttgaatctcagtttcgattgacctacatc
atgatcctccatctgcttcgtgttgaagagcttaaggtggaggacatgttaaaaagaagt
tttgctgaatttcatgctcagaagaaactgccagagaggcaacaacttttgatgcgaaaa
cgtgctcagcctaagaaatctgttgagtgcataaagggtgaaccggcaattgaggaatac
tttgatatgtactcagaggctgaaatgtatagtaaacgaatatcagagtcagtcatgcag
tccccggttgctcaacagtatcttaatgctggaagagtggtggttgtaagatcacaacag
ggacaagaccacttactaggtgttgtggtgaaaacacctgcttctaacaacaagcaatac
atagttttagtactgactcctgaattaccctcaacggtgcaaagtcaatcaggtacaggt
aaaccgaatgataaaaaaggtcccgacttccagatattggtacctaaatcaaagcgtggg
ttagatgatgagtataacacatcagtcacgtctcgcaaaggatcaggcattattaacatt
aagttacctcaccatggtaatgctgctggagtaaattatgaggttagaggtgttgagaat
aaggagttcctctgcatatgcaatgtcaaaataaaaattgatcaagtccggcttcttgaa
gatgttagcgctggagcatactcatatactgtccaacagctgctgggtctaaaatctcaa
ggaaataagtaccctcctgccctagatccagttagagacctgaagttgaaagacgtggat
ctcgttgaagcttattacaaatggagtaatcttttgcaaaagatggcacaaaataagtgc
catggatgtgttaagttggatgagaacattaaattagctggagaaatgaagaggcacaag
gaggaattggaaagattggagtttcaaatgtcagacgaggcacttcagcagatgcctgac
tttctgggccggatagatgtattgaaggaaattggctgtatagacgctgatcttgtagtt
caaataaaaggtcgtgtggcttgtgaaatgaactccggggaggagctgatatgcactgaa
tgcctgttcgagaatcaaatggatgatttggaaccagaggaagcagtagccatcatgtct
gcctttgtgtttcagcagaaagagagtaaagcaccctccctcacgccaaagctcactcag
gctagaaagaggttgtacgacactgcaataagactaggggagctccaaacgcagtttaaa
ctacagattgagcccaaggagtatgctgaagaaaatctaaagtttggcctcgttgaagtg
gtatacgaatgggcaaagggcactccatttgcagatatatgcgagctcacagacgtccca
gaaggcgtgatagtaaggaccatcgtgagactggacgagacatgccgagagttcaaaaat
gctgctgcaatcatgggcaactccgcgctgtacaagaaaatggaaacagcttccaacgtt
ataaaacgcgatattgtcttcgcggccagcttgtacattaccggcgtttaa
DBGET
integrated database retrieval system
