Ipomoea nil (Japanese morning glory): 109180417
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Entry
109180417 CDS
T04663
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109180417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109180417
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109180417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
WD40_like
PROPPIN
WDR54
Motif
Other DBs
NCBI-GeneID:
109180417
NCBI-ProteinID:
XP_019185524
LinkDB
All DBs
Position
Un
AA seq
753 aa
AA seq
DB search
MMPAGDPSQHHHHHQQQQQQQQQQQQHHYHQQQQHHPQPPPPNHQHQHQHQQPYPFGDFP
RGPQPPPGPPQMMRQPSASSTTLNANGPPPPEYHHPSMPPGPPPPHHAYDGAAHADSYAA
KRIRKMGQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAVDMLPTGAYVDNPSTS
FAAKFVHTSLNKNRCSINRVVWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVR
SMVWSYNDNWMVTGDDGGAIKYWQTNMNNVKANKTAHKESVRDLSFCRTDLKFCSCSDDT
TVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHG
HKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF
VSGSYDGSIFHWLVGHETPQVEITNAHDSGVCDLAWHPIGYILCSGSNDHATKFWCRNRP
GDLARDKFSLNQQGTNDQNSALGYRPGNVGGPDAPSTPGAFGSGLIRNEGTIPGVGAAMP
LSLPSLDSSSQGDQKNPLSLSMPMGAPPLPPGPHPSLRAANQQQGYQQNMQQVPQQQMNS
MPLLPLQPPSHMPMMQHPHLPRPPPQLQPMNMQGVQSSMPGSMPVPSMQMPGPMGMQGNM
NQMGPPMPQGHFMGMNAQPGGMQAMQGPPNTGGNQMFQPSGGFNRPQGGQMPLMPGMNHF
QQSMPSNFGVQSGMPPPLPPGPPPHGQGQGGHQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccgccggcgatccatcgcagcaccaccaccatcaccaacagcaacaacaacaa
cagcagcagcaacagcaacaccactaccaccaacaacagcagcaccacccgcagccgccg
ccgcctaatcaccaacaccaacaccagcaccagcagccatatccgttcggagacttccca
aggggtccacaacctccgcccggtccgcctcaaatgatgcgtcagccctcggcttcctcc
actactctcaacgcaaatggccctccccctcccgaatatcaccacccctccatgccccct
ggacctcctcctcctcatcacgcttacgatggtgcagctcatgctgacagttatgccgca
aagagaataaggaaaatgggacaaagaagagctgttgactatactagtacagttgtacga
tatatgcagattcgcatgtggcaacgggattcaagggacagaactgtattgcaacctacc
ccagcagcagcagttgacatgctaccaacaggtgcctatgtagataacccgtccaccagt
tttgctgcaaagtttgttcatacatcactcaacaaaaaccgttgttcaattaatcgtgtt
gtgtggacacctactgggaggcgtcttattactggatctcaaagtggtgaatttactctc
tggaatggacagtcttttaactttgaaatgatacttcaggctcatgatcaggcagtcaga
tcaatggtatggagctacaatgacaactggatggtaactggtgatgatgggggtgctata
aaatattggcagacaaacatgaataatgtaaaggctaataaaactgcacataaagaatca
gtacgtgacttaagcttctgccggacagatttgaaattctgttcttgttctgatgatact
actgttaaggtttgggactttgctcggtgccaagaagagcgctcattatccggccatggt
tgggatgtgaagagtgttgattggcatcctacaaagtctttactggtgtcaggtggaaaa
gacaatcttgttaaactttgggatgccaagtcagggagagagttgtgctcatttcatggc
cacaagaatactgttctttgtgtcaagtggaatcaaaatggtaactgggtccttactgct
tcgaaggatcaaattataaagctttatgatataagggccatgaaggagcttgagtcattt
cgtgggcatcgaaaagatgtcacagctttggcttggcatccatttcatgaagagtatttt
gttagtgggagttatgacggttcaatatttcattggcttgtggggcatgaaactcctcaa
gttgaaattacaaatgcacatgatagtggtgtttgtgatcttgcatggcacccaataggg
tatattctttgcagtggcagcaatgatcatgcaacaaagttctggtgcagaaataggcct
ggggatttagctcgtgataaatttagcttgaatcagcaaggtaccaatgatcaaaactct
gctctaggttacaggccaggtaatgttggaggacccgatgctccatcaacgcctggagcg
tttggttctggtttgatacgaaatgagggcacaattcctggcgttggagctgcaatgcca
ctgtctcttccatcccttgattcatcctcacaaggagatcaaaagaatcctttatctcta
tcgatgcctatgggtgctcccccacttcctcccggtccccatccatcccttcgtgctgca
aatcagcagcaaggttatcaacaaaatatgcagcaagtcccacagcagcaaatgaactct
atgccgttgctcccactacaacccccatctcatatgcctatgatgcagcatcctcattta
cctcgcccacctccccagttacagcctatgaatatgcaaggtgtccaatcttcaatgcct
ggatctatgcccgttccatcaatgcaaatgcccggtccaatggggatgcaaggtaatatg
aaccagatgggtcctccaatgcctcaaggtcactttatgggtatgaacgctcaacccgga
ggaatgcaggcaatgcaaggccctccaaacacaggtggaaaccaaatgtttcagcccagt
ggaggcttcaacagaccgcaaggtgggcagatgccactcatgcccgggatgaatcacttt
cagcaatctatgccctcgaattttggagtgcaatcgggcatgccaccaccactccctcca
gggccgccgccacatggccaaggacaaggaggacatcaatag
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