Ipomoea nil (Japanese morning glory): 109189785
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Entry
109189785 CDS
T04663
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109189785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109189785
03019 Messenger RNA biogenesis [BR:
ini03019
]
109189785
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109189785
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109189785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
zf-C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
109189785
NCBI-ProteinID:
XP_019195955
LinkDB
All DBs
Position
Un
AA seq
933 aa
AA seq
DB search
MNEPRLQNPRAAIGGSFASSKQMSNDTSAGASKSAPTSILDRFKTMLKEPDEEVRVSLED
GGISPSTMDMVVRLYEIVLSELTFNSKPIITELTIIAGEQREHGQGIANAICARILEAPV
EHKLPSLYLLDSIVKNIGREYIRHFSARLPEVFCEAYRQVQPNMFAALRHLFGTWSTVFP
SSVLRKIEACLQFSPSTSHQSSGLTNLRASESPRPGHGIHVNPKYLEARRQLVGHSTINA
VGAEKLSSTGRAGLISSDIDAVKLLPTAAARTVRPSSPFGVGRARSLSPPVDDFAVESSP
QISERPSPSHSRIDYGLNGVMAGDDETIDWHRNLLHDDSSQRLENSVAYSVKKGIDLQGP
RALIDAYGIDEREKAFNYHHHKLGQPDANGIGKRVGVKTWQNTEEEEFNWEDMSPTLGDP
SRRNDFSSSMPPSRRFITGPSVGSLQAISAINDSRRSLSDQAQHSLVKSGRGITSKIPGF
YEEASLISAPSYSQEPQFLPQDFPQQSHHRIRVEGGGRAPSMLSGTGLSTKVGEQKLHLV
GNLTTANGKFWRPPSVASRVNPGFNSSVQDVQAVNTGLSTGAWPTISMHNLPRFPVQHPG
AVPLNHQRSGQMSLSQPQLPCHDVLQNKVPPAAIAVPTHTLMPPSNYGYTPQGQGVSGVQ
STLPMVNIPNTSLQFTGAALAPIARVPTPAAPQMMPTLQPSGQGTQSAPQGGTFSNLINT
LMAQGLISLSNQAPPEDSVGTEFNMELLKERHESTITALYSALPRQCKTCGLRFKSQDAH
SSHMDWHVTKNRLSKNRKHNPSRKWFVSLSMWLSSAEALGTDAVPGFLPLEDVVEKKDDD
ELAVPADDEQNACALCGEPFDDFYSDETEEWMYRGAVYMNAPTGSTTGMDRSQLGPIVHA
KCRSESSSSCIEASKKHDEGYTDDGGLRKRMRS
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaccaagactgcagaaccctagagcggccattggaggcagcttcgctagctct
aagcaaatgtcaaacgatacatctgcgggagcttcaaagtccgcgccgacctcaatactc
gaccggtttaagaccatgttgaaggagccagatgaggaggttagggtttctttggaagat
ggtggtatttcgccttccactatggatatggttgtgaggctttatgagattgtgttgtcg
gaattaactttcaattcgaagcctatcatcactgaactaaccataattgctggggagcag
agagagcacggccagggcattgcgaatgcaatctgtgctcgtattctggaggccccagtt
gagcataaattgccatctctttaccttcttgacagtattgtaaagaatataggcagggaa
tatataaggcacttctctgcccgtttgcctgaggtgttttgtgaggcctacagacaagtc
cagcccaacatgtttgctgccctgcgccacctatttggtacctggtcaacagttttccca
tcatctgttctccgcaagattgaggcttgcctccagttttccccatccacaagccatcaa
tcttctggcttgaccaacttgagagcttctgaatctcctcggccaggtcatggaatacat
gtaaatccaaaatatttagaagcgagaagacaattagtagggcattcaactataaatgct
gtaggagctgaaaagttgagctctactggtcgtgccggacttatatcttctgacatagat
gctgtaaaattgcttcctactgcagctgcaaggactgtacggccatcttctccttttggt
gtgggacgagcaaggtcactctcaccaccagttgatgattttgctgtagaaagttctcca
caaatttctgaaaggccatcaccatctcattctagaatagattatgggcttaatggagta
atggccggagatgatgagacaattgactggcacagaaatcttttacatgatgatagcagt
cagaggttggaaaactctgttgcatatagtgtcaaaaaaggaattgaccttcaaggacct
agagctctgattgatgcatatggaatagatgaaagggaaaaagcatttaattatcatcat
cataagcttggtcagccagatgcaaatggtatcggcaaaagggtaggtgttaaaacatgg
caaaatactgaagaggaagaatttaattgggaagacatgagtccaacacttggagatcct
agtcggcgtaatgatttttcatcatctatgccaccatctaggagatttataaccggaccc
tctgttggttctcttcaagccatatctgctatcaatgattccagaaggagcttatcagat
caggcccagcattctttagttaagtctggacgagggataactagtaagattccaggattc
tatgaggaggcatctcttatttcagctccaagttatagtcaagaacctcagtttctgcca
caagatttcccacagcaatcccatcaccgtattagggttgaaggaggtggaagagctccc
tcaatgctttcaggaaccggactttcaacgaaagtgggtgagcaaaagcttcatttagtt
ggaaatttaacaactgcaaatggaaaattttggaggcccccaagtgttgcttcaagagtg
aatcctggttttaactcttcagttcaggatgttcaagcagttaacacagggctttcaact
ggtgcatggcccacaataagcatgcacaatctgcctcgtttccctgttcaacatcctggt
gcagtcccattaaatcatcaaaggtctggacaaatgtctctatcacaaccacagttgccg
tgtcatgatgttctacagaataaggttccaccagctgcaattgcagttccaactcatact
ctaatgccaccatcgaattatggctacactccacaaggtcaaggtgtatctggtgtgcaa
tctactctgcctatggtgaatatcccaaatacatctttgcagttcactggagcagccttg
gcacccatagctagagttccaactcctgctgcacctcaaatgatgcctacacttcaacct
tctggtcaaggcactcaaagtgctccccaaggtggtactttttccaatttgatcaacact
ttgatggctcaaggtttgatttcattatcaaatcaagctcctccagaggactctgtgggc
actgagttcaatatggaactcctaaaggagcgtcatgagtcaacaataactgctctatac
tctgcccttcctaggcagtgcaaaacatgtggtcttcgattcaaatcccaagatgctcat
agcagtcacatggattggcatgtaaccaagaaccggctatctaaaaaccgcaagcataat
ccttctcgtaagtggtttgtaagtcttagtatgtggctgagtagtgcagaggcattgggc
accgatgcagttcctggatttctacctcttgaagatgttgtggagaagaaggatgatgat
gaactagctgttcctgcagatgatgagcagaatgcttgtgctttatgtggtgagcctttt
gatgatttttatagtgatgagactgaggaatggatgtacagaggggctgtctacatgaat
gcaccaactgggtcaacaactgggatggataggtctcaattaggtcccattgtgcatgca
aaatgccggtccgagtctagtagcagttgcattgaggcttcgaaaaaacatgatgagggt
tatacagatgatggaggtctgaggaaacgaatgcgcagttag
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