KEGG   Ignicoccus pacificus: IPA_09355
Entry
IPA_09355         CDS       T08506                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ipc  Ignicoccus pacificus
Pathway
ipc03030  DNA replication
ipc03410  Base excision repair
ipc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ipc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IPA_09355
   03410 Base excision repair
    IPA_09355
   03420 Nucleotide excision repair
    IPA_09355
   03430 Mismatch repair
    IPA_09355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipc03032]
    IPA_09355
   03400 DNA repair and recombination proteins [BR:ipc03400]
    IPA_09355
Enzymes [BR:ipc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IPA_09355
    6.5.1.6  DNA ligase (ATP or NAD+)
     IPA_09355
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     IPA_09355
DNA replication proteins [BR:ipc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    IPA_09355
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     IPA_09355
DNA repair and recombination proteins [BR:ipc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     IPA_09355
   NER (nucleotide excision repair)
    Other NER factors
     IPA_09355
   MMR (mismatch excision repair)
    Other MMR factors
     IPA_09355
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: UXD21898
UniProt: A0A977KB91
LinkDB
Position
1601172..1602923
AA seq 583 aa
MEKLESTSSRIQTVAILTSLFKKVLDENKDLIDKVVYFIQGKLWPDWYGYPEIGIGEKGI
IKAIALASGLKEREIEELYKSLGDLGLVAERAMSKKKAVGLAAFVKKKTPLTFEKVYNTL
KRIAFMQGEGSRDLKIKALAGLFTEASPKEAKYIARFVQGKLRLGVGDTSIIEALAQLFG
VPKEQVERAYNLRADLGALALLMAKEGPDVVKRVHPKPGIPLRPMLAERLHDPVEILKKL
GGVGLAEYKYDGERAQIHILPDGRVIIFSRRLENITEPYPDVVQYAKKHVKAKEAIIEGE
IVAVDPRTGELRPFQELMHRRRKHDIHIAMKEYPVHVRLFDLMYADGEDYTDKPLPIRRK
KLEEILDQVEEFRIAENKIVDNPEDLEKFFYEAINNGCEGLVVKAIHDRSIYQAGARGWL
WIKYKRDYKSEMIEPVDLVVVGAFYGKGRRGGTYGALLMAGYDKERDVFMTVCKVGSGFS
DEELAKLPELLKPYIIPKKHPRVVSQMEADVWVQPALVAEIIGAEITISPMHTCALDKVK
AGAGLAIRFPRFIRWRPDKGPEDATTCDEIIEMYKMKLHKVEE
NT seq 1752 nt   +upstreamnt  +downstreamnt
ttggaaaagctagaaagtacaagttctaggatacaaacagtagctatactgacatcattg
tttaaaaaggtattagatgaaaacaaggatttgatcgataaagtcgtgtatttcatccaa
ggaaagctttggccagactggtacggctaccctgagataggtattggagaaaaaggaata
ataaaggctatagccttagcctctggcttaaaggaaagggaaatagaggagctctacaag
agcttgggagatctgggcctagtagcagagagggcaatgagtaagaagaaggcagtggga
ttggcagcttttgtaaagaagaaaacaccacttaccttcgagaaggtctataatacctta
aagagaatagcattcatgcaaggtgaaggaagtagagatctcaagataaaagcactagct
ggattgttcacggaggcctctcctaaggaggccaagtacatagctagattcgttcaagga
aaactcagattaggggtgggcgacacctccataatagaagctttggcgcaactcttcggt
gtccccaaggaacaagtggagagggcttacaacttaagagccgacctaggagctctggct
ctcttaatggcgaaggagggacctgatgtagtcaagagggttcatccgaagcccggaatt
ccactaagacccatgctggctgagaggctgcacgaccccgtcgagatactcaagaagtta
ggtggtgtgggactcgctgagtacaagtacgacggcgagagagctcaaatacacatactc
ccagatgggagagttattatcttttctagaagattggaaaacattaccgaaccttatccg
gacgtagttcagtatgccaagaagcacgtaaaggcaaaggaggcgataattgagggagaa
atagtagcagtagatcctaggaccggtgagctaagacccttccaagaactcatgcacagg
aggaggaaacacgacattcacatagcgatgaaggagtaccccgtccacgtaagactgttt
gacttaatgtacgccgacggcgaagattacaccgacaaacctctacctattaggagaaag
aagctggaggaaatactcgatcaagtagaggagttcagaatagccgagaacaaaatagtt
gacaatcccgaggatttggagaagttcttctacgaagctataaataacggctgtgaaggt
ctagtggtcaaggccatccacgatagaagcatttaccaagccggcgccagaggatggctg
tggattaagtacaagagggactacaagagcgagatgatagaacctgttgacttagtggtc
gtaggagcgttctacggcaagggtagaagaggaggaacctatggcgcgttgcttatggcg
ggttatgataaggagagagacgtattcatgacggtatgtaaggtaggttccggcttcagc
gatgaggagttagccaagctcccagagctcttgaagccctacatcattccaaagaagcat
ccgagagtggtcagtcagatggaggcggatgtatgggttcaacccgcgctagtagccgaa
ataataggtgcggaaataaccataagtcctatgcatacttgtgccttagacaaggtcaaa
gcaggtgctggactcgcaattaggttccctagattcatccgttggagacccgacaaagga
cctgaagatgctacaacatgtgacgagataattgaaatgtacaagatgaagctccataaa
gtcgaggagtga

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