Idiomarina piscisalsi: CEW91_03075
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Entry
CEW91_03075 CDS
T04931
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ipi
Idiomarina piscisalsi
Pathway
ipi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEW91_03075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipi03019
]
CEW91_03075
03009 Ribosome biogenesis [BR:
ipi03009
]
CEW91_03075
Enzymes [BR:
ipi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEW91_03075
Messenger RNA biogenesis [BR:
ipi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEW91_03075
Ribosome biogenesis [BR:
ipi03009
]
Prokaryotic type
rRNA helicases
CEW91_03075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
SecA_DEAD
MatB
Motif
Other DBs
NCBI-ProteinID:
ASG65195
LinkDB
All DBs
Position
654908..656674
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AA seq
588 aa
AA seq
DB search
MSKTQTSLSFSDMALPSAVLEQLNAMGFETPTPIQQQSIPALLEGNDVLGEAQTGTGKTA
AFGLPALAKIDPSLKQTQVLVVTPTRELAIQVAEALEGFSKQMRGVGVATVYGGAAFGPQ
VKALKQGTSIVVGTPGRLIDLLNKNVLQLDGLKVAVLDEADEMLNMGFIEDIETILKGVP
ETAQRALFSATMPNAIRKLAKTFLNKPLNIQIEAVAREKATIKQKAWKVQGMTKMTALTR
LLEVTPYQRALIFVRTRQDTMDVAELLQRSGFKASPLSGDLNQAQREQTVSQLRSGHIEI
LVATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFFRAKERHLLR
HYERLTNAPVEFFEVPNANQLSQHRQQQLLEKLQASMQADNAHADSDKLKKLLGQWLESD
ELSAEDLALALLTEQHKQRPLFLKEDRPVREMRNDRPGRNERGDKRKPRAERGGRAADID
FDTYKIQVGKEHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDVMHVL
KKARVRQQPMGLELSDEQVKRAPRPPRDRDARGPKRRQAGKGAARRFN
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagactcaaacgagcctgtcgttcagcgacatggccctaccttctgctgtgctt
gaacaactgaacgccatgggttttgaaaccccaacccctattcagcagcagtcaatccct
gctctattagagggtaatgatgtgttaggtgaagcgcaaacaggtaccggtaaaacggcc
gcatttggcttgcctgcgctggccaaaattgacccttcgttgaaacagactcaagtctta
gtagtaacgcctacacgtgagttagccattcaggttgctgaagcgttagaaggcttttct
aagcagatgcgtggtgttggcgttgctaccgtttatggtggtgctgcctttggtccgcag
gtaaaagcgttaaaacaaggtacctcaattgttgttggtacgccgggtcgtcttatcgac
ttactgaataaaaatgtattgcaactggatggtttgaaggttgcggtattggatgaagcc
gacgaaatgttgaacatgggcttcattgaagacatcgaaaccattttaaaaggtgtgcct
gaaacggcccagcgagcgttgttctcagcgactatgccgaatgccatccgtaaattggcg
aaaaccttcctgaataaaccattgaatattcagattgaagcggttgcgcgtgaaaaagca
acgattaagcagaaagcgtggaaagttcagggcatgacgaaaatgaccgctctgactcgt
ttattggaagtgactccgtatcaacgtgcattgattttcgtgcgcactcgccaggacact
atggatgttgctgagctgttgcagcgctcaggtttcaaagcgtcgccgttaagcggcgat
ttaaaccaggctcaacgcgaacaaacagtcagccagctgcgcagcggtcatatcgaaatt
ctggtggcgacagacgttgtagcacgtggtttggatgtacctgaaattacccacgttatt
aactacgacttgccaagtgacaccgagtcttatgttcaccgtattggtcgtaccggccgt
gcagggcgttcaggcgaagcgattttgttcttccgcgcgaaagagcgtcatttgttgcgt
cactacgagcgtttgaccaatgctccggtagaatttttcgaggttccaaatgcgaaccag
ttgagtcagcatcgccaacagcaactactagagaagcttcaggcatcgatgcaggcagac
aatgcgcatgctgacagtgacaagctgaaaaagctgcttggtcaatggctcgaaagtgat
gaactttctgctgaagacttagccttggcgcttttgactgaacaacataaacaacgcccg
ttgttcttaaaagaagatcgtccagtgcgtgaaatgcgtaatgatcgcccaggacgtaat
gagcgtggtgacaaacgtaagcctcgcgctgaacgcggcggacgtgcagccgatatcgac
tttgatacctataaaattcaagtgggtaaagagcatggtgctcgtcccggagacatcgtt
ggcgcgattgcaaacgaagcctctatggacagcaaatacatcggtcaaattcagttgttc
gataaccactcgctggttcagttgccaaagggtatgccgaaagatgttatgcacgtactg
aaaaaagcgcgtgttcgtcagcagccaatgggccttgagctaagtgatgagcaagtgaaa
cgagcgccacgtccaccgcgtgatcgtgacgcccgtggtcctaaacgccgtcaggcagga
aagggcgcagcacgtcgttttaactaa
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