Ictalurus punctatus (channel catfish): 108254782
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Entry
108254782 CDS
T04658
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108254782
Membrane trafficking [BR:
ipu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
108254782
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
Tup_N
Motif
Other DBs
NCBI-GeneID:
108254782
NCBI-ProteinID:
XP_017305581
Ensembl:
ENSIPUG00000022461
UniProt:
A0A2D0PJM0
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All DBs
Position
21:complement(18637913..18652765)
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AA seq
1123 aa
AA seq
DB search
MSWFNASQLSSFAKQALSTAQKSIDRVLDIQEEDQWGDAITPSLDDVQNKPVSTGWGMNQ
WDSPSEECPTTLTPSSEAITKPVTRTVVDETESFFSAFLSPVDGQPVKKTPVVSVAPTKS
YRRPQEKSEKETQPAAEDDVDSSTLSQEDLNKQSSVQVAETQPEEVKPKEEASVLESVLE
QTEETEDAESKTEAQDSTSSPQIPKVDVPTEPERVGKVESCVSAELKSPEKDSPKDTLLE
SKDAKAEDRQSDTPSPPVSAFSSGTSTTSDIEVLDHESVISESSGSSRQETAEAKAGLHL
MQGSFQLLSASTCSDFQRLDDYPKLTESCGSSSDAFERIDSFSMHSLDSRSVSEVNSDDE
IPGSRTLASVTAGTSPLPALPAPLTTQEQEDAEGGTTDCVKDQSMDEMEESGRSATPVNS
EHPEDLPEEEQESGSCLLLSNERTEPEESHDSVTSPITEEQKGASTCQLLELQKIVDELT
GRLEKREAQLLAVSKDKARLEEECDNLKDEMISLKEESSSVQSLKDEFTQRIADTERKAQ
LACKERDIAKKEIKGLREELSTRFNSTETLELIREKEEQIKGLLEEGEKLSKQQLQHSNI
IKKLRAKEKESDTMISKQSKKLKEQEDELQQLQQVLDAKEEIEKQHRESIKKLNSALERQ
EKELSRLQTENEEVQEKNRSLQAALDASYKELAELHKSNATKASEAQELALCREVQAKEE
LSLALDKAQEEARLQQEALANQVADLRMALQRAEQQQARKEDYLREEISELQQRLQGAEN
RNQELSQSVTSATRPLLRQIENLQSTLGSQTASWEKLEKNISDRLAEAQAQLAVAVEKER
SATEEMHAIKAQLASLESQNSSLRQEKGRLQGQLDVEKTRREKLENDSSRERVELENLKG
EYTRALEDAKKEKLLLTNQLEMEKVKVEQEKKKCYLAQEALKEKERKALSTSLSEPPASS
TPSLSRSSSVSGGDHSGIHTSMLSHQEDCPDHSFASVTLGGSSLYEAARLSGGSSIVENL
QSQLKLREGEITQLQVEISNLERSRSAMAEELVRLTNQNDELEAKVKEIPRLRVQLKDLE
QRHNTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDELLKNQK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcaacgcgtcccagttgtccagtttcgctaaacaggctctgagcaccgca
cagaaatccatcgaccgagttctggatatacaagaagaggatcagtggggcgacgccatc
acacctagtctagacgatgtacagaacaagccagtgtccacaggatggggtatgaaccag
tgggattctccttcagaagaatgcccgacgaccctcacgccttcatccgaggccatcacc
aagcccgtcactcgcaccgtggtggatgaaaccgagagtttcttcagtgccttcttgtct
cctgtagacgggcagccggtcaagaagactccggtggtgtccgtggcgccgaccaaatcc
taccgccggccgcaggagaaatcggaaaaagagacgcagcccgctgccgaggatgacgtc
gactcttccacgctttctcaggaagatctgaacaaacaaagcagcgtacaagtagcggaa
acccagccagaggaggtgaagccaaaagaagaagcgtctgttctggagtctgtactggag
caaacggaagaaacggaagacgctgagagcaaaacagaggcacaggattccacttcgagt
ccacaaatcccaaaggtggacgtgcctacggagcctgaacgtgtaggaaaagtcgagagc
tgtgtttccgccgaacttaagagcccggagaaagactctcccaaagacacattgttggaa
tccaaagacgctaaagcagaagacaggcagagtgacactccatctcctcctgtgagcgcc
ttctcatccggtacctccaccaccagtgacatcgaggttctggaccacgagagcgtcatc
agcgagagttcaggcagctccaggcaagagacggctgaggctaaagcggggctgcacctc
atgcagggctctttccagctcctctccgcttcgacgtgcagcgatttccagcgcctggat
gactacccgaagctgacggagagctgcgggtcctcgtctgacgctttcgagcgcatcgac
tcgttcagcatgcactctctggacagccgcagcgtcagcgaagtcaactcggacgacgag
atccccggcagccgcactctggcatccgttaccgccggaaccagcccgctcccggctctc
ccggcgccgctgaccactcaggagcaggaagacgcagagggagggacaaccgactgtgta
aaggaccaatcgatggacgagatggaggagagcgggcgcagcgcaactccggtgaactcc
gaacacccagaagatctgccggaggaggagcaggaatccgggtcatgtctcttgctgtct
aatgaaagaactgaacctgaagagtcacatgactctgtgacatcacccataactgaggag
cagaaaggagcctccacctgccagctcctggaactacagaagattgttgacgagctcaca
ggcaggctggagaaacgagaagcccagctgctagctgttagcaaagacaaggctcgtctg
gaggaagagtgtgataacctcaaagatgagatgatcagtctgaaggaggagagctccagc
gtgcagtccctcaaagacgagttcacgcagcgcatcgctgacacggagaggaaagctcag
ctcgcctgcaaggagcgggacatcgccaagaaggaaatcaagggtcttcgagaagagctg
tcgaccaggttcaactccaccgaaaccctggagctgatcagagagaaggaggaacagatc
aaaggccttctagaagagggcgagaaactgtccaagcagcagctgcagcactccaacatc
atcaagaagctgagggccaaagagaaggagagcgacacgatgatctccaagcagtccaag
aaactcaaagagcaagaggacgaactccaacagctgcagcaggttctggatgcgaaggag
gagattgagaagcagcatagagagagcattaagaagctgaactctgccttggagcgtcag
gagaaggaactgagcaggttgcagactgaaaatgaggaggtgcaggagaagaaccggagc
ctgcaggccgccctggacgcctcttacaaggagcttgccgagctgcacaaatccaatgct
acgaaggccagcgaggcacaggagctggcgctctgccgcgaggtccaggctaaggaggag
ctcagtctggcattggacaaagcccaggaagaggcccgccttcagcaggaggcgctggcc
aatcaggtggcagatttgaggatggctctgcagagagctgagcagcagcaggccaggaag
gaggactacctacgagaggagatcagcgaacttcagcagaggttgcagggggcggagaac
agaaaccaggaactaagtcagagcgttacctcggcgacgaggcccctcctcaggcagatt
gaaaatctgcagtctactctcgggtctcagacggcatcctgggaaaaactggagaagaac
atctcggaccgcttagctgaggctcaggcccagctcgctgtcgcggtagagaaggagcgc
tctgcgacagaggaaatgcatgccatcaaggctcagctggcttctctggagtcccagaat
tcctcactgcggcaggagaagggacggctgcaggggcagttggacgtggagaagacacgg
cgtgagaagctggagaacgacagcagcagggagcgtgttgaactggagaatctgaaaggc
gagtacactcgagctctggaagacgccaaaaaggagaagctgctgttaacaaaccagctt
gagatggagaaagtgaaggtggagcaggagaagaagaaatgctaccttgcacaagaggcc
ttgaaggaaaaggagcggaaggcgctgagtacatcactgagcgagcctccggcgtcctcc
actccatcactctctcgctccagctccgtcagtgggggggatcacagcggcatacacacc
tccatgctctcccaccaggaggactgtccggatcactcgttcgcctccgtgaccctcggt
gggagcagcctgtacgaggcggcgcgtctcagcggaggctccagcatcgtcgagaacctg
caatcacagctcaaactgcgggagggggaaatcacacagctccaggtggagatctcaaat
ctagagcggagtcgctcggcgatggcggaagaactggtgcggctgactaatcagaacgat
gagctggaggccaaagtgaaggagatccccaggctcagagtgcagctcaaggacctggag
cagagacacaacaccatcctgcagatgtatggcgagaaagcggaagaggccgaggagttg
cggctcgacctggaggacgtcaagaacatgtacaagacccaaatcgacgagctgctcaag
aaccagaaataa
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integrated database retrieval system
