Ictalurus punctatus (channel catfish): 108259055
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Entry
108259055 CDS
T04658
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108259055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108259055
Enzymes [BR:
ipu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108259055
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108259055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
108259055
NCBI-ProteinID:
XP_017313678
UniProt:
A0A2D0Q4N6
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All DBs
Position
26:complement(9947390..9951248)
Genome browser
AA seq
918 aa
AA seq
DB search
MEGSSKGERTEETPKSDAASKTFVAAQVPFLDLCTVLENIQKAKHRPDKAKCLKDFLDSW
RRFHAALHKDNPNTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTTAKGESGDFALTAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHSDAPELYNVSTDLERVCR
QLHDPSISLNEVSISLFSAFKPMLAAVANIRQVEKQMGNKPFYIETKLDGERIQLHKDGD
VYKYYSRNSYEYTQQFGSSPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNFTTETFMQKG
SKFDVKRMVEDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPVKGRIQLVQYT
EAKTRQEVINALNEAIDNRDEGIMVKDPMSIYKPDKRGESWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGQKPTVFHTLCRIGSGYTMKELYELGLKLAKHW
KVFRKSSPPPGIWCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIRE
DKEWYECMTLDELNQFRDKASGKLASKHFHFQEDEPEKRKRKLASKPKKTIGIVDHFKAQ
DLSTVTKETDMFEDVEFCVMSGSNTHSKAELEKAVACCGGIVVQNPGKDTYCVIAGVENV
RVKNLIGSNQHDVLQASWLLECVDRKQVLPWQPRHMIHMSPSTKEHFAKEYDCYGDSYYV
DTDEQQLRDVFSRMGTVDMDAVSIASIEQKYSWDDLPTSMFRPYRAYFDRCSDIGDPESL
IKFTCLDFRALEFCFHGGTVVERLEEGISHVVMAGEERLLDLRTHRRLFTKKFKIVRETW
VTESIKAGHVLNDNDYLV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggagggctcatccaaaggtgagagaacagaggaaacacccaaaagtgacgctgcatct
aaaacatttgtggctgcacaagtgccatttcttgacctgtgcactgttcttgagaatatt
cagaaagccaaacatcggccagacaaggccaaatgcttaaaggatttcttagattcatgg
agaaggtttcatgcagctcttcacaaagataatcccaacacgacagattcattctaccca
gccatgcgtcttattgtgcctccttttgaaagggagagaatggcctatggtatcaaagaa
aacatgttagccaaactctacattgaggtcttggggcttccaaaatcggggccagaggca
aataaacttctcaattaccgagcgcctactacagccaaaggagaatctggagactttgcc
cttacagcttactttgtcctcaaaaagagatgcacaagccagggtaatctaagcatcaaa
gaggtcaatgacttcttggactctgtagcgataaataatgccagcaaacagaaagacctt
gtgaagaaaagccttttacatttgattacgcaaagctcagctttggaacaaaaatggctt
attcgtatgatcctgaaagacatgaaacttgggattagcaaggagaccgttctccaggtt
tttcactcagatgctccagagctctacaatgtctctacagacttggagagggtctgcaga
cagctacatgacccctctatttccttgaatgaggtgtccatcagcctgttttctgccttc
aaacccatgctggcagctgttgccaacatccgccaagtggagaaacagatggggaacaag
cccttctatattgagaccaagctggatggtgagcgcattcaacttcataaggatggggat
gtatacaaatactacagccgtaactcctatgaatacacgcaacagtttgggtcctcacca
ctagagggttccctcacaccatacatccacaatgtctttaaatctcatgttgttaattgc
atcttagatggagagatgatggcttataacttcaccacagagaccttcatgcaaaaaggc
agcaaatttgatgtcaagcgaatggtggaagactctgatttacaaacatgcttttgtgtg
tttgacgttttgcttgtcaatgaccagaagtttggaaacgagcctctcaagaagcgttac
gacactctccagacagtcttcacacccgtcaaaggccggatccagctggtacagtacact
gaagccaaaaccaggcaggaagtgataaatgccctcaatgaagctattgacaaccgtgac
gaaggcatcatggtcaaagatcccatgtccatctacaaaccagataaacgtggtgaaagc
tggctgaagatcaaacctgaatatgttgatggcctgatggatgaattggatttgctaata
gtgggaggctattggggtaaaggcagacggagtggaatgttgtcccactttctctgtgct
gttgctgaaacgccaagtcctggacagaagccaacagtgttccatacactctgtcgaatt
ggatcaggctacaccatgaaggagctctacgagcttggcctgaaactggccaaacactgg
aaggtttttcgcaagagtagccctccgccaggcatttggtgtgggacagagaagccagag
gtttacattgagccaagaaactcggtgatcattcaagtcaaagcggcggagattgttacc
agtgacatgtacaaaactaactgcactctgcgattccccaggattgagaggatccgagag
gacaaagaatggtatgagtgcatgaccttggatgagctaaatcagttccgtgataaagcc
tcgggtaagttggcatccaagcactttcacttccaggaagatgagccggagaagaggaaa
cggaaactcgcatccaagcccaaaaagaccattggcattgttgaccacttcaaagctcaa
gacctgtccactgtcaccaaagagactgacatgtttgaagatgtggaattctgtgtaatg
agcggaagcaacactcattccaaggccgagcttgaaaaggcagtggcctgttgcggaggc
attgtagtccagaaccctggaaaggacacatactgtgtgattgcaggtgttgagaatgtg
cgggtaaagaacctcatcggttcaaaccaacatgatgtattacaggcttcctggctcctg
gaatgtgtggacaggaaacaggtgctaccatggcaaccacgacacatgatccacatgtcc
ccttccacaaaggaacactttgctaaagagtatgactgctatggagacagttactacgtc
gacacagatgagcagcagctgagggatgtcttcagtagaatgggcactgttgacatggat
gcagtatccatagcttcaatcgagcagaagtacagctgggatgacttgcccactagcatg
ttcagaccttaccgtgcctactttgatcgatgttctgatattggagatccagaaagtctt
attaagtttacatgtctggactttcgggctctggagttttgctttcatgggggcacagta
gtagaaagactagaagaaggcatctcgcatgtagtcatggcgggagaagagcgattattg
gacctaaggacacacagacgcctctttactaagaagtttaagattgttcgagaaacatgg
gtgactgaatctattaaagcaggacatgtacttaatgacaatgattaccttgtgtaa
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