Ictalurus punctatus (channel catfish): 108259220
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Entry
108259220 CDS
T04658
Name
(RefSeq) cytoplasmic dynein 1 light intermediate chain 2 isoform X1
KO
K10416
dynein cytoplasmic 1 light intermediate chain
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04145
Phagosome
ipu04814
Motor proteins
ipu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108259220
09142 Cell motility
04814 Motor proteins
108259220
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108259220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108259220
03036 Chromosome and associated proteins [BR:
ipu03036
]
108259220
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108259220
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
108259220
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
108259220
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
108259220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DLIC
ABC_tran
Roc
Arf
AAA_22
AAA_16
AAA_29
PduV-EutP
NACHT
AAA_24
TsaE
AAA_25
SRP54
G-alpha
AAA_7
Motif
Other DBs
NCBI-GeneID:
108259220
NCBI-ProteinID:
XP_017313971
Ensembl:
ENSIPUG00000014114
UniProt:
A0A2D0Q8C8
LinkDB
All DBs
Position
27:complement(19094440..19107159)
Genome browser
AA seq
493 aa
AA seq
DB search
MAPVLEKKLLGAAGTEGHSMETNAEEDEGQNLWSSILSEVSTRSSTKLPSGRNILLFGDD
GSGKTTLMTKLQGAEHNKKGRGLEYLYLNVHDEDRDDVTRCNVWILDGDVYHKGLLKFAV
PSESLKDSVAVFVVDMSRPWSIMESLQKWTSVLREHVDKLKIPPEDMRDMEQRMVRAFQE
YMEPEEATPSSPQRRSAPAGGDDESVVLPLGENVLTHNLGIPVLIVCTKCDAVTVLEKDH
DYKEEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYMVHKLYDFQFTTPALVVE
KDAVFIPSGWDNEKKISILHENFTTVRPEDPFEDFIIKPPVRKLVHDKEINAEDEQVFLM
KQQSLLAKQPATPSRAAESPARTASGSPRPTVRTGPTNVASVSPMTTVKKPDPNMKGAAA
NEGVLANFFNSLLSKKTGAPGSPGTAGTAVQGSAKKTGQKPALSDVQAELDRMTHKSDST
VAANHSTAPENEA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctccggtgttggagaagaagctgctgggtgcagccgggacagaaggccacagcatg
gagaccaacgccgaggaggatgaaggacagaacctgtggtcctcgatcctcagcgaggtg
tcgactcgttccagtaccaaacttccgtccgggaggaacatcctgctcttcggtgatgat
ggatcggggaaaacgacgctgatgacgaagctccaaggggcggagcacaataagaagggc
agaggactggagtacctgtacctgaatgtccacgatgaagacagagacgacgtgacgcgc
tgtaacgtgtggattctggatggagacgtttatcacaaaggcctgctgaaattcgccgtg
ccctccgagtctctgaaggacagcgtggccgtgttcgtggtggacatgtccagaccctgg
tccatcatggagtctctgcagaagtggacgagtgtgctgagagaacacgtggacaagctg
aagattccccccgaggacatgagggacatggagcagaggatggtgagggcgtttcaggag
tacatggagcccgaggaggcgactccgtcctcccctcagagacgaagtgctcctgcagga
ggagacgatgagtctgtggtgctgccgctgggagaaaacgtcctcacacacaacctgggg
atccccgtactgatcgtctgcactaagtgtgatgctgtcactgtgttggagaaagatcac
gactacaaagaggagcattttgactttattcagtcgcacctcaggaggttctgcctgcag
tatggagctgctctgatctacacttcggtaaaagaggagaagaacctggaccttctgtac
aagtacatggtgcacaaactgtacgacttccagttcaccacaccagccttagtggtggag
aaagacgcggtgttcattccgtccgggtgggacaacgagaaaaagatctccatcttacac
gaaaacttcaccaccgtccggcctgaagatcccttcgaggatttcatcatcaagccgcca
gtacgcaagttagtgcacgataaagagataaacgctgaagatgagcaggtcttcctcatg
aagcagcagtctttgttagccaagcagccagccactccatcacgagcagcagaatctcct
gcacggacagcatctggttctcctcggcccaccgtacgcaccggacccaccaacgtagcg
agtgtgtctcccatgacaaccgtaaagaaacccgaccccaacatgaaaggtgctgctgca
aatgagggtgttttggcgaacttctttaacagtctgttgagtaaaaagaccggagctcct
ggaagtccgggtacagcaggaacagcagtgcagggatcagccaagaaaacagggcagaag
ccggctctgagtgacgtgcaagctgaactggaccgcatgacgcacaaatctgactccact
gtcgcggccaatcacagcacagcgccagagaacgaggcgtaa
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