Ictalurus punctatus (channel catfish): 108259941
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Entry
108259941 CDS
T04658
Name
(RefSeq) RNA binding protein fox-1 homolog 1 isoform X1
KO
K14946
RNA binding protein fox-1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108259941
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108259941
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fox-1_C
RRM_1
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
108259941
NCBI-ProteinID:
XP_017315256
Ensembl:
ENSIPUG00000015215
UniProt:
A0A2D0QC20
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All DBs
Position
2:18745680..19070783
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AA seq
395 aa
AA seq
DB search
MLHPLTGAPCVALAEVGARPQLSSSCALTFVYLQQGNQDAPAPPEPMAQPYPSAQFAPPQ
NGLPTEYPASHPHPAPEYPGTSAVPEHTLNMYPAAHTHSEPSADSSAHTVSGTATQTDDA
AQTDSQQQTQSSETTENKTQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS
KGFGFVTFESSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYANGWKLNPVV
GAVYSPEFYAVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPHIPAYGGVVYQD
GFYGADIYGGYAAYRYAQPATAAAAAYSDSYGRVYAADPYNHALAPAATYSVGAMNAFAP
LTDAKTRSHADDVGLVLSSLQASIYRGGYSRFAPY
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgttgcatccgctcacgggcgccccgtgcgtggcactggctgaggtgggagcgcgcccg
cagctgtcctcctcgtgcgccttgactttcgtctacctgcagcagggtaatcaggacgcc
cccgccccaccggagcccatggcccagccatacccctccgcccagttcgccccccctcag
aatggcctgcccactgagtacccggcgtctcaccctcaccccgcccccgagtaccccggc
acgagcgccgtacccgagcacacgctgaacatgtatcctgcagcgcacacacacagcgag
cccagcgccgactccagcgcacacaccgtctccggcacagctacgcagacagacgatgca
gcacagacagacagccagcaacagacgcagtcctccgaaaccacggaaaacaagacgcag
ccgaagcgtctccacgtctccaacattcccttcaggttcagagatccagacctcaggcaa
atgttcggccaatttggtaaaatcttagatgttgaaatcatttttaatgagaggggctct
aagggttttggtttcgtaactttcgaaagtagtgctgatgcggacagggcgagggagaaa
ttacacggcacggtggtagaaggccgtaaaatagaggtgaacaatgcaacagcacgagta
atgacaaacaaaaagaccgtcaacccatatgcaaacggctggaagttgaatcctgtggta
ggtgcagtctacagcccagaattctatgcagtgccaggcttcccgtacccagctgccacg
gcggctgcagcctacagaggggcacacttaagagggagaggacgcaccgtgtacaacaca
tttcgggcagcagctcctccaccacacatcccagcgtacggaggtgtcgtgtaccaggat
ggattttatggtgcagatatttatggtggttacgctgcctaccgatacgcccagcctgcc
acagctgccgctgccgcctatagtgacagttacggacgagtttatgctgccgacccctac
aaccacgcacttgctccagcagccacatacagcgttggtgccatgaacgctttcgcacca
ctgaccgacgccaagaccaggagccacgcagacgacgtgggtctcgttctttcttcgctg
caggctagtatataccgaggcggatacagccgtttcgctccatactaa
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