Ictalurus punctatus (channel catfish): 108268187
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Entry
108268187 CDS
T04658
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108268187 (frem1a)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
108268187
NCBI-ProteinID:
XP_017328488
Ensembl:
ENSIPUG00000005425
UniProt:
A0A2D0RD70
LinkDB
All DBs
Position
7:complement(16397170..16423261)
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AA seq
2185 aa
AA seq
DB search
MVLQQRTRMWPFWFLLLLGLLHFCMCSLVKTNHGLRVKRGQSAFLQEGDLQFHIPRERDT
CKLEVVLNEPITQRVGTLSPQVFDCHYLADEVKYTHNGCPILKEDTVKLRLYRFTETETY
SELFSLHIEIMEPDCNVIKLGPQTLQVPEFYGLSNMLDGNVMSFHYEHRPNIECTIRVMT
PDSGLPGHGQLVTGEPDKLEGPRGDEPDSFVSIRQQLENKARSKCKSEDCLKGLKLVTIT
KVSCEEFLMMGIRYQHTDPPSPDIDYIAIKLDLTDTRSRSIIQSEQAWIPVTIKESVPNQ
PPKPAFMSMFILEVDQFILTSLSTAILDAVDAETPKNRLVFNITKPPSEGFITHLSDHTK
PISSFTWVDLNEMLISFQPPNSSHTQRRNYEVELEVHDFYFEKSSPIIVHVSVRTADTNA
PRVSWNMGLSLLEGQSRPITWDQLQIVDNDDLKAVRIITVDGLQHGRLTVRGGKGFMFTV
SDITAGVVRYYHDDSDTTKDFVVFRITDGRHQTRHKFPINILPKDDSPPFLITNMVLELS
EGQTALLRGSILQASDTDSSDDYILFNITKPPQAGEIMKLPGPGITGYPVMRFLQKDLFH
SIIYYRHFGNEVFDDSFEVVLSDFHDPPNLSEPQVIVIQIQPVPDQPPKEAPGVTRHLIV
KETDVVYLTKKQLHFVDVESPDCELTYTVTTPPFYTTTYGGHDAGRLFLVDSIPKLAKDP
NAPVLRLFTQHTVNYMKVAYMPPFQDIGPYPQHIQFVLSVTSEQGRTTTGICFNITVLPV
DNQSPEVHMNQLTVDEGGECWVSADHLHLTDVDSLEDSLRVALKRRPQHGDVYLDGVPLS
QGQTFTVRDLKSLKVRYRHDSSETEEDNIKCIATDGVNSVDFVLHIKVTLVNDEMPALVP
GLKTVLECAEGQDVVITIEYICATDVDSDDSKLTYLIARQPYHGVVLKNGIVVDRFFQED
IEARIISYKHTGLEVGLLPRRDTITFVISDEQTAPVPSCCFDRPPQFNRQTKHPQDSLLI
YDLNITVYPVDNQPPFIVIGEVLQVDEGGSTSITVAHIGASDQDTPLEDLQLVLVSPPQF
GYIENILPSPGFEKSNMGISIASFSYRDVLNGHINYVQSQHQRTEPTADQFMLYISDGKH
QSSAIPFYIIIKPTNDESPDFIARNISVREGDMKELDASIINAVDLDVPRDRLTFRIIQQ
PQHGAIMGGLHGNDVAHYRRSIQNHGTEVHVQVFTMEDLRNGMMLMYLHDDSESEQDSFI
IQLSDGKHQLQRDILVKVVPINDEKPCIIRNTGIEVEPGEARLISSAVLSAHDNDTPSTN
IIYVFESVPVHGLLQIKAGLDWRTLTAEMNCSQEALDMNLLRYVHTAQPGAHTQDFFIFH
LQDGRNRSPAQHFHISMKELQKGDIALFVKPVKASRGEHVVITTDVLLAVDGTERPEELL
YVITVPPVHGHMEYIKHTGIPIHSFSQLDIAANLVRYVHDIRATSPRDTVQFVISNGKST
RNGTLEILVEMTDRVLPTLMQMAGLQVPQGSTITITTDNLHLSDPDTPPHCLIFILVQPP
QYGQIIVKGFPLAPGSNFTQQNLLDLDVAYRHLGGASQIDRFTFIAADSTARGFLVGGRT
HTDPVFFSIQIETLDRSAPRVMVLETLWKVELLKDGRYGIFISSRELKAQDMNAADGNLI
FHILRAPYFGYLENATNGAFVRQRFTQSDLNKRNILYMINLSLEALSDCLEFAVSDPLGN
TGPSHKLEFSWASVELTKTEYRVCEGKGPLSLTVQRKGNMQDSSYVTLKVKELTAAIGKD
FISAPSTLIQFDPGVASRQWKVELVQDFLEEAEEMFEVTLNSPVGAIQRGNNKAVITIMD
NKNGQCAEKQSPRGPDLQGKDLQAGSYPKHGSIQVETFPITLGDGSESVRGDNLPQVITP
FSKKGLRTNGNGKSIRPSSITQSGSDVLYTYHGIMSLTVEDETTAFNSGKKAQVQVTSRG
QQRSLPGKTTSHLTALPTPNRRGTAPQNIFSRPEPKVCTPELAGFLHFNASLGQLLQCNG
ISWKPWAATDEAVNAQKCPQGWTYHSHHCYLLSTERKATWNNAARTCRESFQGNLVSVLS
KADMDWLWDFSERKPFWIGLNDRVSKGQWEWMDGEPVTYTNWRHGPPRTKIKSNKKCVLV
WRKTKWQIRDCKTGKGHHFVCYVKT
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atggttcttcaacaaaggactcgtatgtggccattttggtttctgcttttgctgggactt
ttgcacttttgcatgtgctccctggtgaagaccaaccatggcctgcgggtgaagagagga
cagtcagctttcttgcaggaaggagatctgcaattccacatacccagagagagggatacc
tgcaagctggaagtggttctgaatgaacctattacccaacgtgttggcacactgtcccca
caggtttttgactgccactatttggctgatgaggtgaaatatacgcataatggctgtcct
attttaaaagaagatactgtcaaacttcgattgtacagattcacagagacagagacatat
agtgaactgttctcactccatattgagatcatggaacctgactgtaatgttataaagttg
ggaccacagacattgcaagttccagagttctatggcctttccaatatgcttgatggcaat
gtgatgtccttccactatgagcatcggcccaacatagagtgtactattagggtgatgaca
ccagactctggtctacctggacatggtcagctggtcactggtgaacctgacaagctagaa
gggccaagaggagatgagccagacagctttgtctcaattcgacaacaattagaaaataaa
gccagatccaaatgcaagagtgaagactgtttaaaaggactaaaattggtgacaattaca
aaagtgtcttgcgaagaattcttaatgatgggcattcgctatcagcatactgatcctcca
tcacctgatattgattacattgctatcaaactggatctcacagacacaaggagcaggagc
ataatccagtcagaacaagcctggatccctgtgaccattaaagagtctgttcccaaccag
cccccaaagcctgccttcatgtccatgttcatcctggaagtggatcagttcatcctgact
tcactgtccacagccattcttgatgcagtagatgctgagaccccaaagaacaggctggtg
ttcaatatcaccaagcctccaagtgagggcttcatcactcatttgtctgatcacaccaag
cccatctcatctttcacctgggtggacctcaatgaaatgcttatcagcttccagcctcca
aattccagccatacacaacgcaggaactatgaggtagagcttgaagtccatgatttctac
tttgagaaaagttcacctattatagtacatgtgtcagtcaggacagcagacacaaatgca
ccaagagtgtcatggaacatgggtctcagtctcctggaagggcagtctcggcccatcacg
tgggatcagctgcaaattgtggacaacgatgatctaaaggctgtaagaatcatcactgtg
gatggcttacagcatggaagactaacagtcagaggtggaaaagggttcatgttcactgta
agtgacatcacggctggagtggtgcgctattatcatgatgacagcgataccaccaaagac
tttgtggtctttcggatcactgatggccgccaccaaaccagacataagttccccatcaac
atcttacccaaggatgacagtccaccgttcctcatcaccaatatggtcctggaactttct
gagggacaaacagctcttcttagaggttcaatacttcaagcatcagacacggactccagt
gatgactacatcttattcaatatcactaagcctcctcaagcaggggagatcatgaagttg
ccaggtccaggaattacaggatatcctgtgatgcgttttctacaaaaggatctctttcat
tccatcatctactacaggcactttggcaatgaagtatttgatgactcttttgaagtggtg
ttatctgacttccatgatcctcccaatctctcagagcctcaggtcattgtgattcaaatt
caacctgtcccagatcagccacctaaagaggccccaggagtaactcgacatctgatagtc
aaagagacagatgtggtatatttaaccaagaagcagttgcactttgttgatgttgagtcg
ccagactgtgagcttacctacactgttaccaccccacctttctacactaccacatatggg
ggacatgatgcagggcggttgttcctggttgacagcatcccaaaattggctaaggatccc
aatgcccccgtgcttagacttttcacacagcataccgtcaactacatgaaagtggcttac
atgccgcctttccaagatattgggccttatcctcagcatattcaatttgtgctgtctgta
accagtgagcagggccgaactacgactggaatctgtttcaatattacagtcctgccagta
gacaaccaatccccagaggtgcacatgaaccagttaactgtggatgaagggggagaatgc
tgggtcagtgcagatcacttgcacctgactgatgtggattctctggaggactcactacgt
gtggcgctgaagagaagacctcagcatggggacgtgtatctggatggtgtacccctgagt
caaggccagactttcactgttagagacctgaaaagtctaaaagttagatatcgccatgat
agttcagagacagaggaagataacattaaatgtatagccacagatggggtgaattcagtt
gactttgttttacatattaaggtaacactagtcaatgatgaaatgccagcactggtgcca
ggcttgaagactgttctagagtgtgcagagggacaggatgttgtgatcaccatagagtac
atctgtgcaacagatgttgatagtgatgacagcaaactgacctatctgattgctcgtcag
ccatatcatggtgtagtgctaaagaacggtatagtggtagacaggttctttcaagaagat
atagaggccaggatcatcagctacaaacacacaggtctggaggttggattgctccctcgt
cgtgacaccattacattcgtaatctctgatgaacagacggctccagttccgtcatgctgc
tttgacagacctcctcagtttaacaggcaaacaaaacatccccaggactccttgttaatc
tatgacctcaatattactgtttatcctgtggacaaccagccaccattcattgttattggt
gaagtgcttcaggtggatgaaggaggctctacctccatcactgtagcacatattggagcc
tctgaccaggacactcctctggaggacctgcagcttgtattggtgtctccaccacagttt
ggctatattgagaacattctgcctagtccggggtttgagaagagcaacatgggaatcagt
attgcctctttttcctatagggatgtactgaatggacacataaactatgtgcagtcccaa
caccaaaggactgaacccactgctgaccagtttatgctatacatctctgatggcaaacac
caatcctctgcaatccccttctacatcatcatcaagccaacaaatgatgaaagcccagat
ttcatagccaggaacattagtgtccgagagggagacatgaaggagttagatgcctccatt
attaatgctgtggatttggatgttcccagagatcgattaacatttcgcatcatccagcag
ccccaacatggggctatcatgggcgggcttcatggtaatgatgtggcccattatagaaga
tccatccagaatcatggaacagaggttcatgtccaagtcttcaccatggaagatctcaga
aatggtatgatgctgatgtatttgcatgatgactcagagagtgagcaggacagcttcatc
atccagctgtctgatggaaagcaccagctccagagggacatattggtcaaagtggtgcct
atcaatgatgagaagccatgtatcattagaaacactgggattgaggtggaaccaggagaa
gctagacttatttccagtgctgttctaagtgcccatgacaatgacacgccctccactaac
atcatctatgtgtttgagagtgttcctgttcatggcctgcttcagattaaggcaggcctg
gactggaggacactgacagcagaaatgaactgttcccaggaagcactggatatgaatttg
ctgcgctatgtacacacagctcagcctggagctcacacacaagactttttcatctttcat
ctacaggatggcaggaaccgttcccctgcacaacacttccacatctctatgaaggagcta
cagaaaggagacatagcattgtttgtaaagccggtgaaagctagccgtggagagcatgta
gtgatcactacagacgtcttgctggctgtagatggcactgaaaggccagaagagctgctc
tatgtgatcactgtgcctccagtgcatggtcatatggagtacatcaaacacactggcatt
cccatacactcttttagccagctggatatagcggctaatctggtgcgatacgtccatgac
atcagagctacctcacctagagacacagtacagtttgtcatcagtaatggaaaatccaca
cgtaatggtactctggagattttggttgagatgacagacagagttctccctacgctcatg
cagatggctggtctgcaggttcctcagggttccaccattactatcaccactgataacctg
cacctgtctgacccagatacccctccccattgcctgatcttcattcttgtgcagccccca
cagtatggacagattattgtgaaaggtttccccttagctcctgggagcaacttcacacag
cagaacctactggacctggatgttgcttacagacacttaggtggagcttctcagattgat
cgttttacattcattgctgctgatagcacggcaagaggcttcctggtgggagggaggacg
catacagatccagtcttcttttctatacagattgaaacattagaccggtctgctccacgc
gtgatggtgcttgagactctgtggaaagtggaacttctaaaagatggacgttatggaatc
tttatctcatctagagaattaaaggctcaggatatgaatgcagcagatgggaatctcatc
ttccacatactcagagctccttactttggatacttggagaatgccaccaatggtgcgttt
gtgcgtcagaggttcactcaaagtgatctgaacaagaggaatattctgtatatgattaac
ctttccctggaagccttaagtgactgtctggagtttgcagtctctgacccactgggcaac
actggaccatctcacaaattagagttcagctgggccagtgtagagctgaccaagacagag
tatcgtgtgtgtgaaggcaaaggaccactctctcttacagttcagaggaagggcaatatg
caggattcatcatatgtaactctcaaggtaaaggaactaacagcagctataggaaaggat
ttcatatcagctccctcaactctgattcagtttgaccctggtgtggccagtcggcagtgg
aaggtggagcttgtgcaggattttctggaggaggctgaggagatgtttgaggtgacactg
aattcccctgtaggtgcaatacagagaggaaacaacaaagcagtcattacgataatggac
aacaagaatgggcagtgtgctgagaaacagtctcccagagggccagatcttcagggtaag
gatctccaagcagggtcctaccctaaacatggctccatccaggtagagactttccctatc
accctgggagatgggtcagagtctgtcagaggcgataacttgcctcaagttattaccccc
ttctccaagaaaggactaagaaccaatggcaatggaaagtctattcgaccctcttcaatc
actcagagtggatctgatgttctttacacttatcatggaataatgtcactgacagtagag
gatgaaactacagcctttaactctgggaagaaggctcaagtgcaggtaaccagtagaggg
cagcagcgttccctcccaggcaaaaccacaagccaccttacagcacttcctacacctaac
cgaagaggcacagcacctcagaatattttctctaggccagagcctaaggtctgcacccca
gagctggcaggttttctccatttcaatgcaagcttaggccagctcctgcagtgcaatggg
atatcctggaaaccctgggctgctacagatgaggctgtgaatgcacagaagtgtccacag
gggtggacttaccatagtcaccactgctatctgttgagcacagagcgaaaagctacatgg
aacaatgcagccaggacctgtcgagagagcttccaaggcaacctagtcagtgtgctatca
aaagcggacatggattggctctgggacttcagtgagaggaagcccttctggattggtctg
aatgaccgggtgagtaaaggccagtgggaatggatggatggagagccggttacttacacc
aactggaggcatggtccaccccgaaccaaaatcaagagcaacaagaagtgtgttttggtc
tggaggaagacaaaatggcaaatcagagattgtaagactggaaagggacaccattttgtg
tgctatgtgaaaacatga
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