Ictalurus punctatus (channel catfish): 108269322
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Entry
108269322 CDS
T04658
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03008
Ribosome biogenesis in eukaryotes
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108269322
03015 mRNA surveillance pathway
108269322
03008 Ribosome biogenesis in eukaryotes
108269322
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108269322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108269322
03009 Ribosome biogenesis [BR:
ipu03009
]
108269322
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108269322
mRNA cycle factors
Stress granule specific factors
108269322
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108269322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_9
LRR_8
UBA_4
LRR_6
Motif
Other DBs
NCBI-GeneID:
108269322
NCBI-ProteinID:
XP_017330619
Ensembl:
ENSIPUG00000019958
UniProt:
A0A2D0RJB4
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Position
8:complement(8250892..8266307)
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AA seq
658 aa
AA seq
DB search
MFSRGKKCNLAVVKHFRSEGLKEVHAVREVWIDVSFSEHDDRVGGPQFRNRKSHGPPRGR
VYNERVHQRPRGGPAGGFGPGSSGRFLDEAGDVNMNCGQDGTFQGRLNPCGRANRRGDGR
IARDRSGGVWRYRPGGGSQLLGNAERQGGAPISGKSKTWHKITIPYGKKYDKSWLLRSLQ
NLCPIPFTPVHYSMEGQKVQFYVEDDNTASALRSLSRRITDNEGYKVVVITNPCSPPSFL
RSDLKDQDFEHLKQCMSKRFDTSEQFLDLNSIRSDQDLISQNIDVILSRRSCMEAVMKII
KENIPQLTALNLSNNKLYKLDDLTELVNIAPNLTTLNLSHNELKSERELDKLKSLKLTEL
WLDLNPLCDHFTDKATYISAIRGRFPRLLKLDGHSLPAPIGFDVETRTAVPSSKGSYFVS
AEVQEFILRFLHQYYSLYDSGNRQPLLEAYHDEACFSLSLPSSMYNLSKSNLEEYHNHNR
NIKRIKDPVTRFRVLKHTRLNVVAFLNELPKTQHDLASFNVDVNTCTPTLLVFTVSGVFK
DIDVKSKESTRAFSRVFVAVPAMNNGLCLVNDELFVRNATTEEIRRAFATPAPTPSSSPV
SSYSPTQQEMISTFSQKSQMNLDWSQKWLQQNEWDFNRAVQLFTELKVQGSISEVAFT
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccgtggaaagaagtgcaatctcgctgtggttaaacactttcgctcagaaggt
ttgaaggaagtccatgctgtcagagaagtctggatcgatgtcagcttttcggagcatgat
gaccgagtgggtggccctcagttccgtaaccgtaaaagtcatgggccacccaggggacgc
gtgtacaacgaacgtgtacatcagagaccacgagggggtcccgcaggaggcttcggccct
ggttcctcgggcaggtttctggatgaagctggagatgtcaacatgaactgtggccaggat
gggactttccaggggagattgaacccatgtggccgggccaaccgacgaggagatggccga
attgctcgagacagaagtggaggagtctggcggtacaggccaggtggaggaagtcagtta
ttaggcaatgcagaaagacaaggaggtgcaccaatctcaggaaaatccaaaacctggcac
aaaataacgatcccttatggcaagaaatatgataagagctggcttttgaggtctctgcag
aatctctgccccataccttttactccagtacattattccatggaggggcagaaagtgcag
ttctatgtagaggatgacaacactgccagtgccctgcgcagtctgtctcgcaggatcaca
gataatgaaggatataaggtcgttgtgatcactaacccctgttctccaccatccttcctc
cggagtgacctgaaagaccaggactttgaacacttaaagcaatgcatgtccaagcgattt
gatacctcagagcaatttcttgacctgaacagcattcgcagcgatcaagatttgatctct
cagaacatcgatgtgattttgagtaggaggagctgtatggaggctgtgatgaagatcatt
aaagagaatatcccacaactaactgcgctaaacctaagcaataacaagctctacaaactg
gatgaccttacagagctggtgaacatagctcccaatctaacgactctcaacctgtcccat
aacgagttgaagtctgagcgggagctggataagctgaagagcttgaaactaacagagctg
tggctggatctcaatcctctgtgtgatcactttacagacaaggcaacatatatcagtgct
attcgtggacgattccccaggctcctcaaactggacggccacagtcttcctgcgccgata
ggttttgacgttgaaacccgcactgcagttccttcttcaaagggcagctactttgtttca
gctgaagtccaagaattcattctgcgatttctgcaccaatactacagcttgtatgactcg
ggaaacagacagcctctgctggaggcatatcatgatgaggcctgcttctccctcagcctt
ccctcttccatgtacaacctctccaagtctaacttggaagaatatcacaatcacaatcgc
aacattaagagaattaaagaccctgtgacgcggttccgtgtattgaagcacactcgactg
aacgtagttgccttcctgaatgaactgcccaaaacccagcatgacttggcctctttcaat
gtggatgtcaacacatgcacaccaacattactggtgtttacagtcagtggggtgttcaag
gacattgacgtcaagtcaaaagaatctactcgtgccttctcccgggtcttcgttgcagta
ccggccatgaataacgggctatgtttagtcaatgatgaactatttgtgaggaacgctacc
actgaagagatccgccgtgcatttgccacacccgccccgaccccgtccagcagccctgtg
tcctcctactctcccacccagcaggagatgatctccaccttctcccagaaatctcagatg
aatctcgattggtcccaaaagtggctacaacagaatgaatgggacttcaatcgagctgta
cagctctttacagaactcaaggttcagggctccatatcagaggtcgctttcacatag
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