Ictalurus punctatus (channel catfish): 108270181
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Entry
108270181 CDS
T04658
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108270181
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108270181
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
TPR_2
TPR_12
Motif
Other DBs
NCBI-GeneID:
108270181
NCBI-ProteinID:
XP_017332084
Ensembl:
ENSIPUG00000016129
UniProt:
A0A2D0RNJ8
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Position
9:4465368..4474395
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AA seq
1122 aa
AA seq
DB search
MALFPAFGGVSDADNSEKTDLEWLRNCSFISGGALSLHQHTTDRHTEESPTPRHTHTSEQ
KSDEDDTRLKKRRKKEKKKRKKQKKCSRDDSEKSDSDTVYPSDLLNRELEPSQRQEDLAN
VAGVLWLDDLQCPSEKLFYLDRKSDPANWEYRSLYRAHITRYKRKGRSALGLDSRTQGVC
WEDSAPDRKRKEKRDERYFSPSSRRLLNSEAPPTLSNPPTDSTISSDAASFIPLPPCKEE
SDSAPQIGTSADPLQVYDLATSLWLEGKGQPEVKGQPEVKGQVQPPSSNMLMARVEEFNR
KLRENPTDVNMWLEFIQFQDEVGASLSGQGVESERALWDRKLSVVERALQLNPGSVELKL
HRLRLGRGLWDSTTQLKEWKKVVFIHPNSAPLWRSYILFTQSQFSSFSVPMVTSVYRKCL
STLSAVQDGQLTSHPALPGTEYHLLDLFVRQCHFLRQAGHSEKAVCLFQALIEFTFFKPD
NVRDLTTKQQVEFFETFWDSGEPRVGEGGARGWKAWMKQQERGGWIQTPDTEEEDEGDDE
DEIKDKTQPRWRIWLNVESWREANHWLPWRPDKAKGQSEEECEDPDRQVLFDDIGLSLIR
VELPELRLRLLLSFLHILGVPIGSASSSSLIWDDSTLLDDSALLDETLDNERPLTSHDIP
LTGVSAVGHMTSQCDSRKKRAGLCKQGEEFVRNVLEQTLPLFPPQDRTEVTLCWMQYEKL
KVLQCVRSGSKKCIRVQGKRSKRLLKRLLKQQENRSSLSLWREYGHVEWLLGNIEEARRV
FDSALMLGRASGLHDSALCNLCLLYAQLEMELLCPGGAESEKATPTSATSSRAVYILTKL
AEGATYRPFTGEISAVTILKARKAYEHAVSEGVACEKACALIGCFGLFQYLTLGVDAADA
VFTQARENLTCTQQREAVCVLHVALLHHHSSVRVFPLRRLRSALRDALTLLPHSAPLWRL
HLQADIRHYNAANTRRFLHAITKGNHSILPRLFTLTTEQQRKKRIDAVLRSGLPAESLPV
FPETGLYNRIRALFEVAVATECGAHCPLLWRRYINFMVCNGDVERGRGIFYRALQHVPWV
KVLYTDAVSLFPDRVQEVLDLLMEKELRLRTPMEELDILLED
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggcgctatttcctgcatttggcggagtgtcagatgctgataactctgaaaaaacagat
ctagaatggctccgtaattgcagtttcattagtgggggtgctttgtctctacaccaacac
accaccgacagacacacggaggagtcacccactccacgccacacacacaccagtgagcag
aaatctgatgaagatgacaccagattaaagaagaggagaaaaaaagagaagaagaagagg
aagaagcagaagaagtgcagcagagatgattcagagaaaagcgactcggacactgtttac
cccagtgaccttctgaaccgagaactggaaccatcacagagacaggaggacttggctaat
gtggctggggttttgtggcttgatgatcttcagtgtcccagtgagaagctgttctacctg
gacagaaagtccgaccctgcgaactgggagtacagatctctgtacagagctcacatcacc
aggtataagaggaagggcaggtctgctctcggattggacagcaggactcagggcgtatgt
tgggaagactctgccccagacaggaagcgtaaagaaaagagagacgagcgttatttctct
ccctccagccgccgccttctcaactctgaagctccacccactctttcaaaccctcccact
gattccaccatatcctctgatgctgcttcatttatccccctccccccctgtaaggaggag
tctgactccgccccccaaatcggcaccagtgctgatccgctccaagtgtatgaccttgca
acctcactgtggctggagggcaaaggtcagcctgaggtcaaaggtcagcctgaggtcaaa
ggtcaggtgcagccgccttcatcaaacatgttaatggcacgagtggaggagtttaacagg
aaactgagggaaaaccccactgatgtaaacatgtggctggagttcatacagtttcaggac
gaggtgggcgcctccctctcagggcagggggtggagtctgagcgtgctctctgggacagg
aagttgagtgtggtggagcgggcgctgcagttgaaccctggcagtgtggagctgaagctg
cacagactcaggctgggcaggggattgtgggatagcacaacacagctgaaggagtggaag
aaggtggtgttcatccacccaaacagtgcccccctgtggaggagctacatcctgttcaca
cagagccagttcagctccttctctgttcccatggtgaccagcgtatacagaaagtgtctg
agcacgctcagtgcggtgcaggacggacagctgacgtctcacccagcgctgccggggaca
gaataccacctgctcgacctatttgtgcgtcagtgccacttcctgcgtcaggcaggtcac
tcagagaaagctgtgtgtcttttccaggctctgattgagtttaccttcttcaaacccgac
aacgtcagagacctaaccactaaacagcaggtggagttctttgagacattctgggacagt
ggagagccgagggtgggggagggtggggctagagggtggaaagcctggatgaagcagcag
gagagaggaggatggatacaaacacctgatacagaggaggaggatgaaggtgatgatgaa
gatgagattaaagataaaacccagccgaggtggagaatctggctcaacgtggagtcttgg
cgggaagccaaccactggttaccatggagaccggacaaagctaagggccaatcagaggag
gagtgtgaggatccagacagacaggtgttgtttgatgatatcggactgtctttgatccga
gtcgagttgccggaactgcgtctgcgtctcttgctctctttccttcatatactgggcgtg
cccattggctccgcctcttcatcaagccttatttgggatgactccaccctattggatgac
tctgcgctgttggacgagactcttgacaacgaaagacctttgacctcccatgacatccca
ctgactggagttagtgctgtgggtcacatgacctctcagtgtgactctaggaagaagagg
gcagggctttgtaaacagggggaggagtttgttaggaatgttctggaacagaccctccca
ctgtttccacctcaggacagaacagaagtcaccctctgctggatgcaatatgaaaaactc
aaggtgctgcagtgtgtgcgtagtggcagtaagaagtgtattagggtgcaggggaagcgc
agtaagcgtttattgaagcgtttactgaagcaacaggagaatcgcagctctctgtcgctg
tggcgtgagtacggccatgtcgagtggttattaggaaacattgaggaagcacgcagggtt
tttgactccgccctcatgttgggcagagcctcgggtctacatgactccgccctctgcaac
ctctgtctgctttatgcacaattagaaatggaactcctgtgtccgggcggggctgaaagt
gaaaaggccacacccacttctgccacttcctctcgggcagtgtacatcctgaccaaatta
gcagaaggtgccacatacaggcctttcacaggagagatcagcgccgtaaccatactgaag
gcacgcaaagcctacgaacatgccgtatcagagggtgtggcatgtgagaaagcctgtgct
ctgattggctgttttggactgttccagtatttgacgctgggggtagatgcagctgatgcg
gtgttcactcaggccagagagaacctgacgtgcacacagcagcgcgaggccgtgtgtgtc
ctgcatgtggcgctgttacatcatcactccagtgtcagggtgtttccactgcggcgtctg
aggtcagcgctgagagacgcgctcacactgctgccgcacagcgcccccctgtggaggctc
cacctacaggccgacatccgccactacaatgctgccaacacccgccggttcctacacgcc
atcaccaagggcaaccacagcatcctgcctcgactgttcaccttaacaaccgaacagcag
aggaagaaacggatagacgctgtgctgaggtcgggtctcccagctgagtctctccctgtg
tttccggaaaccggcctttacaaccgcatccgtgcactgtttgaggttgccgtggcgacg
gagtgtggtgctcactgccctctgctgtggagacgctacatcaactttatggtgtgtaat
ggggatgtagagagaggaagaggaatcttctacagagccctacagcatgtcccctgggtg
aaagtgctgtacacagacgctgtgagcttgttccctgatcgtgtgcaggaggttttggat
ctgctgatggagaaggagctgagactccgaaccccgatggaggagctggacatcctgctg
gaggactaa
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