Ictalurus punctatus (channel catfish): 108272880
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Entry
108272880 CDS
T04658
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108272880
09124 Replication and repair
03420 Nucleotide excision repair
108272880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108272880
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108272880
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108272880
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108272880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
108272880
NCBI-ProteinID:
XP_017337173
Ensembl:
ENSIPUG00000015859
UniProt:
A0A2D0S338
LinkDB
All DBs
Position
12:26378350..26391108
Genome browser
AA seq
467 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPDILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDHPLP
QAAVALWVKIDSQKDHDQCVSVLTGLRLWHSQQLQGGLQGIVLNPVFKDNLRIALLGGGK
PWADEGNSLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKT
EAGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTVQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLMFLQHLREFGLVFQRKRKSRRYYPTRLAISLAAGVTANPSSSSSSSTAL
NPSPGTGDCGFIVVETNYRVYAYTNSELQIALVALFSEMLYRFPNVVVAQVTRESVQQAI
ANGITAQQIIHFLRTRAHPVMLKQTPALPPTITDQIRLWELERDRLQFTEGVLYNQFLSQ
ADFEVLRDRAQGLGVLVWQNPQHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccgagtacaactgcagtgcaagaaccttcatgaatacctgaaggaactgagt
ccagacatcctggacagactgtacaaccacccagctacatgtctcgccgtttacagggag
ctcccgtctctggcgaagaactatgtgatgcgaatgctgttcctagatcaccctctcccg
caggcagccgtggcattgtgggttaaaatagacagccaaaaggatcatgaccagtgtgtg
tctgtgctgactggactgagactgtggcacagccagcagctgcagggaggccttcagggc
atcgtgctcaaccctgtgtttaaggataacctgaggattgcactgctcggaggtggtaag
ccatgggcagacgagggcaacagtctcggccctgatcggcacgcgcgggacgtagagagc
ctggaccgttatgccatggagcgctgggaggttatccttcacttcatggtgggctccccg
agcgccgcggtcagccaggacctcgctcagctcctcatccaggccggcctcatgaagact
gaggccggtgaagcgccatgcatcacttcagctgggtttcagtttctgctactcgacacc
gcctctcagctgtggtacttcaccctgcagtacctcaaaacagtgcagtctagagggatg
gacctcgtggagattctttccttcctgttccagctgagtttctccaccctcggcagggac
tattctgtcgagggcatgagcgagtctctactgatgttcctgcagcacttacgagagttc
ggcctggttttccagagaaagaggaagtcgaggagatactaccccactagactcgccata
agtctggctgcaggagtcactgccaacccttcatcctcctcctcctcctctactgctttg
aatccttccccaggaacaggagactgtggtttcattgtggtagaaaccaactatcgcgtg
tacgcgtatacaaactcggagctgcagatcgctctggttgcgctcttcagcgagatgctg
tatcggtttcctaacgtggttgtggcgcaggtcactagagagtctgtacagcaggctatt
gctaacggcatcacagcacaacagatcatccacttcctgaggaccagggcacatcctgtt
atgcttaaacagactccagcacttcctccgaccatcacagaccagatcagactgtgggag
cttgaaagagatcggctgcagtttacagaaggcgtattgtacaaccagttcctgtcacag
gctgattttgaggtgctgcgcgatagagctcagggtttgggagtgctggtgtggcagaac
ccacagcacagggtcatggtggtgaccccacatggacacagcgaggttaagaggttctgg
aagagacagaagagtcacacgtag
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