Ictalurus punctatus (channel catfish): 108274236
Help
Entry
108274236 CDS
T04658
Symbol
pcgf5b
Name
(RefSeq) polycomb group RING finger protein 5-B
KO
K11489
polycomb group RING finger protein 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108274236 (pcgf5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108274236 (pcgf5b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
108274236 (pcgf5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAWUL
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_10
zf-RING_5
Actin_micro
zf-Nse
zf-rbx1
zf-C3HC4_3
zf-RING_6
TRAF3_RING
E3_UbLigase_R4
DUF1272
Motif
Other DBs
NCBI-GeneID:
108274236
NCBI-ProteinID:
XP_017339749
Ensembl:
ENSIPUG00000003929
UniProt:
W5U6D8
LinkDB
All DBs
Position
13:complement(11611691..11632981)
Genome browser
AA seq
234 aa
AA seq
DB search
MATQRKHLVKEFNHFITCYVCKGYLIKPTTVTECLHTFCKSCIVQHFEDSNECPKCGIQV
HETNPLEMLRLDNTLEEIIFKLVPGLREKEQQQEIEFWKKNKLKENDDDGPECKRMKMDE
DIDDGGDGDFHRNDPQIAICLDCLRNNGPIGENIVKGLMKKFIRCSTRVTVGTIKKFLSL
KLKLPSSYELDVLCNGEIMGKDHTMEFIYMTRWRLRGENAYPMVLEYRPRIDFG
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atggccactcagaggaagcacttagtcaaggagttcaaccacttcatcacttgttatgtg
tgtaaaggctacctgatcaagcccaccacagtgacagagtgcctgcataccttttgtaaa
agttgcatcgtccagcattttgaagacagcaacgaatgtccgaaatgtggtatccaagtc
catgaaacaaatccgctggaaatgttaaggttggacaacacattagaagaaattatattc
aagcttgtgcctggacttcgggaaaaggaacaacagcaggagattgaattctggaaaaag
aataagttgaaagaaaatgacgatgacggccccgagtgtaagaggatgaagatggacgag
gacattgatgatggaggggatggggacttccacaggaatgacccacagatagccatctgc
ctggattgtctgcgcaacaacggcccaataggagagaacatagttaagggcttaatgaag
aaatttattcgctgctcaactcgtgtcactgtaggaacaatcaagaagttcttaagtcta
aagttaaagcttccaagttcttatgagctagacgttctatgcaacggcgagattatggga
aaagatcacaccatggagttcatatacatgacgaggtggaggcttcgaggtgaaaatgcc
tacccaatggtactggaatatcgtcctcgtattgattttggctaa
DBGET
integrated database retrieval system
