Ictalurus punctatus (channel catfish): 108277163
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Entry
108277163 CDS
T04658
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04010
MAPK signaling pathway
ipu04210
Apoptosis
ipu04218
Cellular senescence
ipu04620
Toll-like receptor signaling pathway
ipu04621
NOD-like receptor signaling pathway
ipu04622
RIG-I-like receptor signaling pathway
ipu04623
Cytosolic DNA-sensing pathway
ipu04625
C-type lectin receptor signaling pathway
ipu04920
Adipocytokine signaling pathway
ipu05132
Salmonella infection
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108277163
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
108277163
04218 Cellular senescence
108277163
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108277163
04621 NOD-like receptor signaling pathway
108277163
04622 RIG-I-like receptor signaling pathway
108277163
04623 Cytosolic DNA-sensing pathway
108277163
04625 C-type lectin receptor signaling pathway
108277163
09152 Endocrine system
04920 Adipocytokine signaling pathway
108277163
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108277163
09171 Infectious disease: bacterial
05132 Salmonella infection
108277163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108277163
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
108277163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
108277163
NCBI-ProteinID:
XP_017345125
Ensembl:
ENSIPUG00000016031
UniProt:
A0A2D0SS46
LinkDB
All DBs
Position
2:complement(18013911..18050567)
Genome browser
AA seq
935 aa
AA seq
DB search
MNEEDTYLPGHQEFFDFDPHWIPVDPGYPAVPTSNPHRMEGPCLQITEQPKQRGFRFRYG
CEGPSHGGLPGACSEKNRKTYPQVKICHYQGPARIVVQLVTNSKQPHLHAHSLVGKQCDK
GICVAELQPKDSSISFPNLGILHVTKKNVSKTLEERMSEAYRLGYNYGVVIHPDIDSFQG
ETRLPRELTDHQRNLICNAAANQAKDMDLSVVRLMFTAFLPDSEGGFTRRLEPVISEPIY
DSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGIVWEAFGDF
SPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDNETSEPKPFTYHPQIIDKEEVQ
RKRQKTLPNFPDYSGGGGVGGMYRGPGGGATSGGSHGGGGGGGGGGGGGHYYQGYYNNFN
SGYGFPPAMGGGGSGIKHFNHGPVEDTDEESDGDVDDDPGTGGVCVQPIFLASEEMSEES
EGLEESDVCETETTDCVFEPRLAELAQRHAGALFDYAISGDIRRLLVPQRPLMTAQDENG
DTGLHLSVIHSQTDAVKNLVEVIVAILGEDVMNMRNDLYQTPLHLAVLTEQKEAAEALME
AGSDITLTDRHGNTVLHLAAQQKDGEMIQMLLRHQDALELSNTHNTAGLCPLHIAVLANS
LSSVRALLEAGANVEVQERTCGRTPLHLATEHDNVSLAGCLLLEGDAEVDSLTYNGSTPL
HIAAGRGSFKLSALLIAAGADPHKENFEPLYFRDEECCREDKDEVDEGYIPGTTPLNMAA
SSEVREILNGKPYQPSTVIIPPQGDMQSLGAETKQALCRCLEESAGGWESLAHTLRLGIL
INAFRLSPRPACTLLDSYEVSGGTVRELLAGLKSIGNSGAVSIMQERIVFEKSDNTQNEN
LTTVGHCVSVDLQDLKLSASDDGYVCDSGVETSFQ
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaggacacgtatcttccagggcaccaggagttctttgactttgatccacac
tggattccagtggacccaggatatcccgctgtgccgacatcgaacccacatcgtatggaa
ggaccttgtctccaaattacagaacaacccaaacagcggggcttcaggtttcgttacggc
tgcgagggcccgtctcacggtggactcccaggagcctgcagtgagaagaacaggaagacg
tatcctcaggtcaagatctgtcattatcagggtccagcacgaattgtggtccagctagtg
accaacagcaaacagccgcacctgcatgcgcacagccttgtgggaaaacaatgtgacaag
ggcatctgtgttgctgaactccagcccaaagactcttccatcagtttccctaacctgggt
atcctccatgtgactaagaagaacgtgagtaagactctggaggagaggatgagtgaagcc
tacaggctcggttacaactacggtgtggtcatccatccggatatcgactctttccaagga
gagacacgccttcccagagagctcacagatcaccagaggaatctgatctgcaatgccgca
gctaaccaggcaaaagacatggacctgagtgtagtgaggctcatgttcactgcatttctg
cccgacagcgagggcggcttcacacgcagactcgaaccagtcatatccgagcccatctac
gacagtaaagccccgaacgcctcgaacctgaagatcgtgcggatggaccgtactgcgggg
tgtgtgacgggtggagaagaagtatacctgctctgtgacaaagttcagaaagatgatatc
caggtgcgcttttacgaggatgacgagacaggaatcgtctgggaggcattcggggatttc
tctcccaccgacgtgcacagacagtttgccatcgtgtttaagacgccgaagtaccgcgac
cagaacctgcagaaacccatctctgtgttcgtgcagctcaagaggaagtctgacaacgag
acgagcgagcccaaaccgttcacctatcacccacagatcatagataaggaagaagtacag
aggaagagacaaaagacgctgcccaatttcccagattacagtggagggggtggagtcggg
ggcatgtatagaggcccaggaggcggggctacgtcagggggcagccatggcggaggtggt
ggaggaggagggggtggaggtggaggtcattattaccagggttattataacaacttcaac
tccggctatggctttccaccagccatgggtggaggagggagcggaattaagcacttcaat
cacggtccggtggaagacacggacgaagagagcgacggcgatgtggacgacgatccgggc
acaggcggagtgtgtgtccagcctatatttctagcgtcggaggagatgagtgaagagagc
gaaggtttggaggagtctgatgtgtgtgagacagaaaccactgactgtgtgtttgagcca
cggttagccgagctagcacagagacatgctggggctttgttcgactacgccataagcggt
gacattcgcaggctgctggttccacagcgccctctgatgactgctcaggatgagaacgga
gacacgggactccacttgagtgtgatccatagtcagacagacgcagtgaagaacctagtg
gaggtgatagtggcgattctcggagaggatgtgatgaacatgaggaacgacctctatcag
actccattgcacctggccgtattgaccgagcagaaggaagcagccgaggcgttaatggag
gcaggaagtgatatcactctgaccgatcgccacggcaacacggtgctccacctggccgcc
cagcagaaggacggagagatgatccaaatgctgctgagacaccaagatgcgctggagtta
agcaacacacacaacacagcaggtctgtgtcctctgcatatagccgtcttggctaacagt
ttgagcagtgtgagggctctgctggaggccggggctaatgtggaggttcaggagcggaca
tgcggtcgcacgccgcttcacctcgctaccgaacacgacaacgtctcactcgccggatgc
ctgctgcttgagggtgacgctgaagtagacagtctgacatataacggctccacacctctt
cacatcgcggcagggcggggctctttcaaactgagcgcactgctcatcgccgcaggtgca
gatcctcataaagagaacttcgagccgctgtacttcagagatgaggagtgctgcagggaa
gacaaagacgaggtggacgagggctacatcccagggacgaccccacttaacatggctgct
tcatcagaggtgcgggaaatcctgaacggtaaaccgtaccagcccagcacggtcatcatc
ccaccacaaggagacatgcagagtctgggcgcagagactaagcaggcgctgtgcagatgt
ctggaggagtccgcaggcggctgggagagtctggcacacacactcagactgggcatcctc
atcaatgccttccgcctcagcccacggcctgcctgcacactgctggacagctatgaggtc
tcaggcgggacagtgcgcgagctcttagcaggtctgaagagtatcgggaacagcggtgcc
gtcagcataatgcaggagcgcattgtgtttgagaaatccgataacacacagaacgaaaat
ctgaccacagtaggccattgtgtctctgtagacctgcaggatctaaaattatctgcgtca
gacgacggctatgtgtgcgacagcggtgtggagacgtccttccagtaa
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