Ictalurus punctatus (channel catfish): 108278027
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Entry
108278027 CDS
T04658
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108278027
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108278027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
PRP1_N
zf-RING_10
U3snoRNP10
Zn_ribbon_SprT
UPF0242
Spc29
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
108278027
NCBI-ProteinID:
XP_047017244
Ensembl:
ENSIPUG00000009708
UniProt:
A0A979FAU6
LinkDB
All DBs
Position
17:complement(25161484..25166456)
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AA seq
559 aa
AA seq
DB search
MAKANISVDQLSVDQFSCPVCLDLLKDPVTTPCGHSYCKVCINGCWDQEDVKGVYSCPQC
RETFTPRPVLRRNNMLAEVVEKLKKTELHAASPAHCYAGPGDVECDSCTGRKRKAAKSCL
VCLASFCEDHLKPHFQSPAFKKHKLVEDCAELQEKICSQHDKLIEIFCRTDQSFICYLCS
MDDHRGHDTVSTKAERMKKQNELQEEQMKSQQRIQEKQEKVQELKQTVDTIKMRSQAAVD
ESEKIFTEMISSMEKKRSEVKEQIRAQEKAELSRAERLLKQLEQEIADLKRRVTELEQLS
HTHDHIHFLQSFPSLCVSPGSEDSSSFTVHQHPSFDGVRKSLSDLKKRVEEICEEEFNKI
RPQAAAVQMILLSEPESREDFLQYFCYLTLDPNTVHHDLILSEKNRAVKRSEREQRYSDH
PERFDSWPQVLCKESVCGRCYWEVKWRGRGVYISLSYKEISRKGRGDECGFGFNSQSWCL
WCSSSSVSFRHYYTQTDLRGPVSSRIGVYVDHSAGTLSFYSVSDTMKLLHRVHTTFTQPL
YAGFRVWSVKSTVRFCDLK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagctaatatttcagtagatcagctttcagtagatcagttcagctgtccagtg
tgcctggatctcctgaaggatccagtgactactccctgtggacacagttactgtaaggtg
tgtattaatggctgctgggatcaggaggatgtgaagggcgtctacagctgtccccagtgt
agagagactttcactccaaggcctgttctacgcaggaacaacatgctggctgaagtggtg
gagaaactgaagaagactgaactccacgctgcttctcctgctcactgttacgctggacct
ggagatgtggagtgtgattcctgcaccgggagaaaacgcaaagccgccaagtcctgtctg
gtgtgtctggcctccttttgtgaagatcaccttaaacctcactttcagtctcctgccttt
aagaagcacaagttagtggaagactgtgcagagctccaagagaagatctgctctcagcac
gacaaactgatcgagatcttctgtcgtactgaccaaagcttcatctgttatttgtgttcg
atggatgatcacagaggccatgatacggtttcaactaaagcagaaagaatgaaaaaacag
aatgagctacaggaggagcagatgaaatcccagcagaggatccaggagaagcaggagaag
gtgcaggagctgaaacagactgtggacactattaagatgcgttcacaggcagcagtagat
gagagtgagaagatctttactgagatgatcagctccatggagaaaaagcgctcggaggtg
aaggagcagatcagagctcaggagaaagctgaactgagtcgagctgaacgactcctgaag
caactggagcaggagattgctgatcttaagaggagagtcactgagctggagcagctttca
cacacacacgatcacatccacttcctccagagtttcccgtctctctgtgtttctcctgga
tctgaggactcatccagcttcactgtccatcaacatccctcatttgatggagtgaggaaa
tctctctcagatctgaaaaaacgagtggaggaaatctgtgaggaggaattcaacaaaatc
cgtccacaagctgcagcagttcagatgattttactctcagaaccagagagcagagaagat
tttctgcagtatttctgttatctgactctggatcccaacacagtacatcatgacctcatt
ctgtctgagaagaacagagcggtgaagcgcagtgagagagaacagcgatactctgatcat
ccagagagatttgactcctggcctcaggtgttgtgtaaggagagtgtgtgtggacgctgt
tactgggaggtgaagtggcgcggtcgtggtgtgtacatatcactctcatataaagagatc
agcaggaaaggacggggtgatgagtgtgggtttggattcaacagtcagtcctggtgtctg
tggtgttcttcttcctctgtctctttccggcactactacacacagactgatctccgaggt
ccagtgtcctccagaataggagtgtatgtggatcacagtgcaggaactctgtccttctac
agcgtctctgacacgatgaagctcctccacagagtccacaccacattcactcagcctcta
tacgctgggttcagggtgtggagtgttaaatcgactgtgaggttctgtgatctgaaatga
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