Ictalurus punctatus (channel catfish): 108278117
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Entry
108278117 CDS
T04658
Name
(RefSeq) tripartite motif-containing protein 16 isoform X2
KO
K12006
tripartite motif-containing protein 16
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108278117
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108278117
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4_2
zf-C3HC4
SPRY
zf-C3HC4_3
zf-RING_2
zf-RING_10
zf-RING_5
zf-RING_6
EzrA
PRP1_N
U-box
DUF6836
CRA
DUF6591
TRAF3_RING
REST_helical
Motif
Other DBs
NCBI-GeneID:
108278117
NCBI-ProteinID:
XP_017346786
UniProt:
A0A2D0SW96
LinkDB
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Position
17:complement(20550822..20567379)
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AA seq
549 aa
AA seq
DB search
MAEAGFSKEKDQISCPVCLDLLKDPVTTPCGHNFCKVCINGCWDKEDLKGVYNCPQCKET
FTPRPVLQRNNMLAEVVEKLKKAASPAHRYAGPVDVECDSCIGRKRKALSYCLVCRASYC
EDHLKPHYQSPAFKKHKLVEPCAELQEKICSQHDKPMEILCRTDQSFICYLCTMDKHKGH
DTVSTKAERTEKQNELKEEQMKSQQRIQEKQEKVQKLKQTVDTIKFRSQTAVDESEKIFT
ELISSMEKKRSEVKELIRAQENAELSRAERLLKQLEQEIADLKRRVTELEQLSHTYDHIH
FLQSFPSLCVSPGSENSPSFTVNQHLSFDGVRKSLSDLKKLVEEMCKEEFNKICPQAVQN
ISPSELKSREDFLQYFCYLTLDPNTVQYRLSLSEKNRAVTRSGTNQRYSDHPERFDYWPQ
VLCKESVCGRRYWEVEWSGVVYISVSYKEIIRKGRGNKCLFGFNSQSWSLRCSSSSVSFR
HNNIATVLQGPVSSRIGVFVDHSAGTLSFYSVSDTMKLLHSVHTTFTQPLYAGFCKWSYD
SPLRLCDRI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggctggtttttcaaaagaaaaggatcagatcagctgtccagtgtgtctggat
ctcctgaaggatccagtgactactccctgtggccacaatttctgtaaggtgtgtattaat
ggctgctgggataaggaggatctgaagggcgtctacaactgcccccagtgtaaggagact
ttcactccaaggcctgttctacaaagaaacaacatgctggctgaagtggtggagaaactg
aagaaagctgcttctcctgctcaccgttacgctggacctgtagatgtggagtgtgattcc
tgcatcgggagaaagcgcaaagccctcagttactgtctggtgtgtcgggcctcctattgt
gaagatcatcttaaacctcactatcagtctcctgcctttaagaagcacaagttagttgaa
ccctgtgcagagctccaggagaagatctgctctcagcacgacaaaccgatggagatcctt
tgtcgtactgaccaaagcttcatctgttacttgtgtacgatggataaacacaaaggccat
gatacagtttcaactaaagcagaaagaactgaaaaacagaatgagctaaaggaggagcag
atgaaatcccagcagaggatccaggagaagcaggagaaggtgcagaagctgaaacagact
gtggacactattaagtttcgttcacagacagcagtagatgagagtgagaagatctttact
gagctgatcagctccatggagaaaaagcgctcggaggtgaaggagttgatcagagctcag
gagaatgctgaactgagtcgagctgaacgactcctgaagcaactggagcaggagattgct
gatcttaagaggagagtcactgagctggagcagctttcacacacatacgatcacatccac
ttcctccagagtttcccatctctgtgtgtttctcctggatctgagaactcgcccagcttc
actgtcaatcaacatctctcatttgatggagtgaggaaatctctctcagatctgaaaaaa
ctagtcgaggaaatgtgtaaggaggaattcaacaaaatctgtccacaagcagttcagaat
atttcaccctcagaactgaagagcagagaagattttctgcagtatttctgttatctgact
ctggatcccaacacagtacaatatcgactaagtctgtctgagaagaacagagcggtgaca
cgtagtgggacaaatcagcgatattctgatcatccagagagatttgactactggcctcag
gtgttgtgtaaggagagtgtgtgtggacgccgatactgggaggtggagtggagcggtgtt
gtgtacatatcggtctcatacaaagagatcatcaggaaagggcggggtaataagtgtttg
tttggattcaacagtcagtcctggagtctgcgatgttcttcttcctctgtctctttccgg
cacaacaacattgcgactgtgctccaaggtccagtgtcctccagaataggagtgtttgtg
gatcacagtgcaggaactctgtccttctacagcgtctctgacacgatgaagctcctccac
agcgtccacaccacattcactcagcctctatacgctgggttctgtaaatggagttatgac
tcacctttgaggttatgtgatcgaatataa
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