Ictalurus punctatus (channel catfish): 108279487
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Entry
108279487 CDS
T04658
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108279487
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108279487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108279487
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108279487
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
GCIP_N
Motif
Other DBs
NCBI-GeneID:
108279487
NCBI-ProteinID:
XP_053544378
Ensembl:
ENSIPUG00000024683
UniProt:
A0A9F7RUD3
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Position
19:27563713..27577223
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AA seq
578 aa
AA seq
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MADGVDHIDIYADVEEEFNQETDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPG
GTEGNKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGISDVLEIKFFENRAN
GQSKGFALVCVGSEASSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFELQSRKSTQSGQM
SGEGKAGPPGVGPRGGFPLGRGRGRFPGPAGPGGDRFPGPVGPGAPPPHFPGGMQGPPRP
PPGPPGPPGPPGPPPPGQGLAPPLSGPPNRGDRPPPPVLFPGQFGQPPLGPLPPGPPPPG
YGPPPGPPPPQQGPPPPGPFPPRPPGPIGPPLALAPPPHLRGPPPGGPPPAPHVNPAFFP
PPGNNNMAAPDRAPPPNDPYGRPPPYDRDYGPGREMDAARAPLSEAEFEEIMNRNRAISS
SAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYG
SASRYTAHLRSELISAQRISALQSSCPLPDSSVSLSRRERSRDRDHSRSREKSRRHKSRS
RDRHEDYYRERSRERDRHRERDRDRERDRDREREYRHR
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgttgatcacatcgacatttacgcagatgtagaagaggagttcaatcag
gaaacggattatcccgttcacgagcagatcgacctgtacgatgatgtcatctccccctcg
gccaataacggtgatgcacccgaggacagagattacctagacaacctgcccgcacctgga
ggcaccgaggggaataaaggagctccgcccaacgtcgtttacacctacacgggcaaacgc
atcgctctgtacatcggcaacctcacctggtggaccacagatgaggatctgactgaagca
attcgctccatcggcatcagcgacgttctggaaatcaagttcttcgagaaccgagctaac
ggacagtcgaaagggtttgcgttggtgtgtgtgggatcagaagcctcctccaggaagttg
atggatttgctgtcgaagcgagagctgcacgggcagaacccgatcgtcacaccctgcaac
aaacagtcgctcagtcagttcgagcttcagtcacgtaagagcacccagtcggggcaaatg
tccggggaagggaaggctggaccaccaggtgtgggtccccgtggcggttttcccctaggt
aggggtcgagggcgctttccaggccctgcagggccaggaggagatcgctttcctggaccc
gttggacctggggcaccccctccacacttccctggtggtatgcagggtcctccccgccct
cctccaggcccccctggtcctccaggtcctcctggccctccacctcctgggcaaggttta
gccccacccctttcaggcccccctaatagaggggaccgcccacctcctcctgtcctgttt
cctggtcagtttggccaacctccgctcggcccgttaccccctggcccacctcctccaggt
tatggtccgccccctggtccacccccacctcagcaaggtccacctcctcctggcccgttc
ccacctcgtccccccggtcctattggccctcccttggctttagctccaccccctcactta
cgtggtccccctcctggaggcccaccacctgccccccacgtcaaccctgccttcttcccg
ccgcccggaaacaacaacatggcagcgccggatagagccccgccccccaacgacccgtac
ggacggccccctccttatgaccgggattacggcccgggcagggagatggacgcagctcgg
gcccctctcagtgaggccgaatttgaggagataatgaacagaaacagagctatctccagc
agtgctatatccagagccgtgtcggacgcaagtgcaggagattacggcagtgctattgag
acactggtgactgcaatttcattaataaagcagtcgaaagtttcagctgatgatcgctgt
aaagtgttaatcagctctctgcaggactgcctgcacggcatagagtccaaatcctacggc
tcggcctccaggtacactgctcatctgcgctcagagctcatctctgctcaacgtatttct
gcactccaatcgtcctgtcctctccctgactcttccgtctctctcagcagacgagagcga
tcgcgggaccgggaccacagtcgctctcgtgagaaaagtcgccgtcacaaatcacgcagc
cgcgatcggcacgaagattactaccgagagcggagccgcgagcgagaccgccatcgcgag
cgggaccgcgaccgagagagagaccgcgaccgagagagggagtaccgccatcgttag
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