Ictalurus punctatus (channel catfish): 108279622
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Entry
108279622 CDS
T04658
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108279622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108279622
03036 Chromosome and associated proteins [BR:
ipu03036
]
108279622
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108279622
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108279622
PBAF complex
108279622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
GCN5L1
Sarcoglycan_2
Motif
Other DBs
NCBI-GeneID:
108279622
NCBI-ProteinID:
XP_017349427
Ensembl:
ENSIPUG00000001713
UniProt:
A0A2D0T3D7
LinkDB
All DBs
Position
2:11742461..11752171
Genome browser
AA seq
437 aa
AA seq
DB search
MSKRPSYAPPPAPAPTTQMPTTPGFVGYNPYSHLAYNNYRLGGNPGGNNRVMNSSGITVP
KPPKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYL
NEYEAEKIEYNDSLKAYHNSPAYLAYVNAKNRAEAALEEESRQRQSRLDKGEPYMSIQPA
EDPDVHVSVCVWLDYDDGFSMKHTAAARFHRNHRLISDILSEVVVPDVRSVVTTARMQVL
KRQVQSLMVHQRKLEAELLQIEDRHQEKKRRFLESTDSFNNELKRLCSLKVEVDMEKLAA
EMAAAEEAARRRAEEREREREKEREREKEREAEAEKTERAAEEDQQGASGPNSSEQNTSS
DSKEQDKPSPMETDEAHADVSEGQQECEERPVEKPEQAESGLEEGASDSNPPLERENSTE
SAPSDTAPEERASAAPQ
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggccgtcttatgccccgccccctgctccggcccccactacacaaatgccc
accacccctgggtttgtggggtacaacccatacagccatctggcctacaacaactacagg
ctgggaggaaaccccggcggaaacaacagggtaatgaattcctcggggattacggttccc
aagccacccaaaccccccgataagcctctgatgccctacatgcggtacagccggaaggta
agcaggaaggtttgggaccaggtgaaagcctccaaccccgatttgaagctatgggagatt
gggaagatcatcgggggcatgtggagggacctcactgacgaggaaaagcaggattacttg
aacgagtatgaagctgagaagatcgaatataacgactccctgaaggcctaccacaactcc
ccggcgtacctagcatacgtgaatgctaagaaccgcgccgaagcggctctggaggaggag
agcaggcagagacagtctcgtctggataaaggagagccttacatgagcatccagccagct
gaagatcctgatgttcatgtgtccgtgtgtgtgtggctagattatgacgacgggttctct
atgaagcacacagcagcagctcgattccataggaaccaccgtctgatcagtgatatcctg
agcgaggtggttgtgcctgacgtccgctcagtggtcactacggcacgcatgcaagtgctc
aaacgacaggtccagtccctcatggtgcaccagaggaaactggaggcagagctgctgcag
attgaagacaggcatcaggagaagaagaggcggttcctcgagtccaccgattccttcaac
aacgagctcaaacggttgtgcagtctgaaagtggaggtggacatggagaagctggcagcg
gagatggcagcggcagaagaagccgcgagacggagggcggaggagagggaaagagagagg
gagaaggagagagagcgggagaaagagcgagaggcggaggcggagaagaccgagagagca
gcggaggaggatcagcagggagcaagtggaccaaacagcagcgagcagaacaccagcagt
gacagcaaggaacaggacaaacccagtccaatggagacagacgaggctcatgctgatgtg
tctgagggccagcaggagtgtgaggagcgcccagtggagaagccagagcaagcagagagt
gggttggaggagggtgcgagcgacagtaatcctccactagagagagaaaacagcacagag
tctgcaccgtctgacaccgcgccggaagagagagcctctgccgccccacagtaa
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