Ictalurus punctatus (channel catfish): 108279868
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Entry
108279868 CDS
T04658
Name
(RefSeq) low-density lipoprotein receptor-related protein 6
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04150
mTOR signaling pathway
ipu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108279868
04150 mTOR signaling pathway
108279868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108279868
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
108279868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
SGL
DUF5050
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
108279868
NCBI-ProteinID:
XP_017349923
Ensembl:
ENSIPUG00000004877
UniProt:
A0A2D0T4T6
LinkDB
All DBs
Position
19:8242977..8290739
Genome browser
AA seq
1634 aa
AA seq
DB search
MKHREQRRREHGRKNMGAVLRTLFLCTFCLQIRAVPLLLYANRRDLRLVDAAQGRAANAT
VVVSGLEDAAAVDFVYSDGLIYWSDVSEEAIKRAVFNGSGSGAQSTVVSGLASPDGLACD
WLGSKLYWTDSETNRIEVSELDGTLRKVVFWQDLDQPRAIALDPGRGYMYWTDWGEIPKI
ERAGMDGTNRGVIIDSDIYWPNGLTLDYSQQKLYWADAKYNFIHRCNLDGTGREVVVKGA
LPHPFALTLYEDTLFWTDWNTHSIHSCQKQTGEERREIHSNIFSPMDIHVFSQKRQLTEV
ASLCSVKNGGCSHLCLLSPVKPYYQCACPTGVQLLEDNKTCRDGATRLLLLARRTDLRRI
SLDTPDFTDIVLHTEDIRHAIAIDYDPVDGHVYWTDDEVHAIRRSRLDGSDAQLLVTSQV
NHPDGIAVDWIARNLYWTDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPVSGYMYW
TDWGEIPKIERATLDGTERVVMVNTSLGWPNGLALDYTERKIYWGDAKTDKIEMMNMDGT
GRRILVEDKLPHIFGFTLLGDYVYWTDWQRRSIERVHKRTAEREVIIDQLPDLMGLKATY
VHQAFGTNACAENNGGCSHLCLFRPQGVACACPIGLELMGDMSTCIVPEAFLLFSRHTDI
RRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEF
GLDYPEGMAVDWLGKNLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFM
YWTEWGGRPKIDRAAMDGTGRITLVPNVGRANGLTIDYAERRLYWTDLDTTLIESSNMLG
LEREVIADDLPHPFGLTQYQDYIYWTDWSQRSIERANKTSGQNRTLIQGHLDYVMDILVF
HSSRQGGWNACASTNGHCSHLCLAVPISSYVCGCPAHYSLNDDNKTCSAPTSFLLFSQKS
AINRMVMDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSKQNVIRRAQEDGNQSMTV
VSNAVGGHNLGLQPFDLSIDIYSRFIYWTSEVTNVINVTRLDGSRVGVVLRGEHDKPRAI
VVNPERGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPVALAIDNELGKLFWADMD
LRRIESSDLSGANRIVIEDSNILQPVGLTVFGNHLYWIDRQQQMIERIDKTTRAGRTKIQ
ARITALTDIHAVHELHVDEYNKHPCTLDNGGCSHICIVKGDGTTRCSCPVHLVLLLDELS
CGEPPTCSPEQFSCTSGEVDCIPQAWRCDGYVECKDESDEHDCPVCSDDEFQCDSKQCVD
LSLRCNGEINCQDRSDENKCDVHCPPDQFTCNNGQCIGKHKKCDHNTDCTDNSDEIGCYP
TEEPSPQPTNTIGSIVGVVMTLFVVGAVYFVCQRVLCPQMKDDGETMTNDFVVHGPSSVP
LGYVPHPSSLSASLPGMSRGKSVIGSLSVMGGSSGPPYDRAHVTGASSSSSSSTKGTYFP
PILNPPPSPATVRSQYTMEFGYSSNSPSTHRSYSYRPYSYRHFAPPTTPCSTDVCDSDYT
PGRRAQPISSIVMAKGYASDANYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSQ
HLYPPPPSPCTDSS
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacagggagcaaaggaggcgagaacacgggaggaaaaacatgggcgcagtgctg
cggactctctttttgtgtactttttgtttgcaaatacgcgccgtgcctctcctcctgtac
gccaacaggcgcgacttgcggctggtggacgcggcccagggacgcgccgccaacgccacg
gtggtggtgagcggcctggaggacgcggcggccgtggacttcgtttacagcgatggtctg
atctactggagcgacgtgagcgaggaggccatcaaacgggccgtcttcaacggctcgggc
tccggcgcccagagcacggtggtgtcgggcctggcctcgcccgacggactggcgtgcgac
tggttagggagtaaactttactggacagactcagaaacgaaccgcatcgaggtatccgag
ctcgacggtacgctcaggaaagtggtgttctggcaggacctggaccagccgagagcgatc
gccctggatccgggcagagggtacatgtactggacagactggggggagatccccaagatc
gagagggcaggtatggatggcacgaatcgaggcgtgatcatcgacagcgatatctactgg
cccaacgggctcacgctggactacagccagcagaagctttactgggccgacgccaagtac
aactttatccatcgctgcaatctggacggcacggggagagaggtggtggtgaagggcgcg
cttccacacccctttgccctaacgctgtacgaagacacgctgttctggaccgactggaat
acgcactccatccactcgtgccagaagcagaccggggaggaacgccgcgagatccactcc
aacatcttctcgcccatggacattcacgtcttcagccagaagagacagctcacggaagtg
gcgagtctgtgctcagtgaaaaacggcggctgttcgcacctgtgcctgctttctccggtc
aagccgtactaccagtgtgcctgtcccaccggcgtgcagctgctggaggacaacaagacc
tgccgagacggagccacgaggctgcttctcctggcacggcgcacagacctgcgacgcatc
tcgctggacacgccggacttcaccgacatcgtcttgcacaccgaggacatccggcacgcc
atcgccatcgactacgaccctgtagacggccacgtctactggacagacgatgaagtgcac
gcgatccgccgctcccggttggacggcagcgacgcgcagctgctcgtcacctcgcaagtg
aatcacccggacggcatcgccgtggactggatcgcccgcaacctctactggaccgacaca
ggcaccgatcgcatcgaagtgacccgccttaacggtaccatgaggaagatcctgatttcc
gaggacctggatgagcccagagctatcgtcctggatcctgtctcggggtacatgtactgg
accgactggggcgagatccctaagatcgagcgcgctactctggacggaaccgagcgagtc
gtgatggtgaacacttccctgggatggcccaacggcctagcgctcgactacacggagagg
aaaatctactggggggatgccaagaccgacaagatcgagatgatgaacatggacggaacg
ggtcgccggatcttggtcgaggacaaacttccgcacatatttggcttcaccctgctgggc
gactacgtttactggacggactggcagcggcggagcatcgagcgcgtgcacaagcgcacc
gccgaacgggaagtgatcatcgaccagctgcctgacctcatggggctgaaggccacctac
gtccaccaggctttcgggacgaacgcgtgcgccgagaacaacggcggctgcagtcacctg
tgcctgttcaggccacagggcgtggcatgtgcgtgtcccatcggcctggagctcatgggc
gacatgagcacgtgcatcgtgccggaagccttcctgctcttctcacgtcacactgacatc
cggcgtatctccctcgaaaccaacaacaacaacgtggccatcccgctcaccggcgtcaag
gaggcatcagcgctcgacttcgacgttaccgacaaccgcatctactggaccgacatcaca
ctgaagaccatcagccgagcattcatgaacggcagtgcgttggagcatgtggtcgagttt
ggtctggactatccagagggcatggcggtggactggctgggcaagaacctgtactgggct
gacaccggcactaaccgcatcgaggtggcaaagctggatggccagcacaggcaggtcctg
gtgtggaaagacctggacagtccacgagctctagcgctggacccggctgaaggtttcatg
tactggaccgagtggggtgggagacccaagattgaccgcgcagccatggatggaaccgga
cgcatcacgctggtgcccaacgtgggtcgtgctaacgggctcaccattgactacgctgag
aggcggctctactggaccgacctggacaccacgcttatcgagtcttccaacatgcttggt
cttgagcgtgaggtgatcgcagatgacttgccccacccttttggtctcacgcaataccaa
gactacatttactggacggactggagccagcgcagcatcgagcgtgctaacaaaaccagc
gggcagaaccgcacgctcattcagggccatctggactacgtcatggacatcctggtgttc
cactcgtcacgtcagggaggctggaacgcctgcgcctccaccaacggccactgctcgcac
ctgtgcctggccgtgcccatcagcagttatgtgtgcggctgcccggcgcattactcgctc
aacgacgacaacaagacctgcagcgcacccacctctttcctactgttcagccagaagtcc
gctattaatcgcatggtaatggatgagcagcagagccctgacatcatcctgcccattcac
agcctgcgcaacgtgcgagccatcgactacgacccactcgacaagcagctctactggatc
gactccaagcagaacgtcatccgtcgtgcccaggaggacggcaatcagagtatgaccgtg
gtgtccaacgcggtggggggccacaatctgggcttgcaaccgtttgacctgagcatcgac
atctacagccgcttcatctactggaccagcgaggtgaccaacgtaatcaacgtgacgcgc
ctcgacggctcgcgtgtcggagtggtgctccgtggagagcacgacaagccccgggccatt
gtggttaaccccgagagagggtacatgtacttcaccaacctgcaggagcgctctcctaag
atcgagcgggcagctctggacggcactgagcgagaggtgctgttcttcagtggcctgagc
aaacctgtcgccctcgccatcgacaacgagctgggcaaactcttctgggccgacatggac
ctgcgtcgcatcgagagcagcgatctatctggcgccaaccggattgtgatcgaggactcc
aacatactgcagccagtgggtttgacggtgttcggaaaccacctctactggatcgatcgt
cagcagcagatgatcgagcgcatcgacaagacgacgcgagcgggacgcacgaaaatccaa
gctcggattaccgcccttacggacatccacgcggtccacgagcttcacgtggacgagtac
aataaacacccctgtaccttagacaacggaggatgctcccacatctgtatcgtgaagggg
gatggaacgacgcgctgctcctgccctgttcacctggtcctcctgctggacgaactttcc
tgtggagagccgcccacgtgttccccggagcagttctcgtgcacctcgggagaggtggac
tgcatcccgcaggcctggcgctgcgacggatacgtcgagtgcaaagacgaaagcgacgag
cacgactgccccgtgtgctcggacgacgagtttcagtgcgacagcaagcagtgcgtggac
ctctcactgcgctgcaacggagagatcaactgccaggaccgctcggacgagaacaagtgc
gacgttcattgccctccggatcagttcacctgtaacaacggtcagtgcattggcaagcac
aagaagtgcgaccataacacggactgcacagacaattcggatgaaattggctgctacccc
acagaggagccttccccacagcccaccaacaccatcggctccatcgtcggcgtggtgatg
acgctgttcgtcgtgggcgccgtgtacttcgtgtgtcagcgcgtcctctgcccacagatg
aaggacgacggcgagaccatgaccaacgattttgtcgtgcacgggccgtcctctgtgccg
ctgggctacgtgccgcatccgagctccctgtccgcctcccttccaggcatgtctcgtggg
aagtctgtgattggctcgttgagcgtcatgggcggaagcagcggaccgccgtacgaccgt
gctcacgtaacgggcgcttcctccagcagctcgtccagcactaagggcacttacttccct
cctatcctgaaccctcctccttctccagctacagtgcgctctcagtacacaatggagttc
ggctactcgtccaacagtccctccacgcaccgctcgtacagctacagaccatacagctac
cggcacttcgctcctccgaccacgccgtgcagcacagacgtatgcgacagcgactacacg
cccggccgcagagcacagcccatctcctccatcgtcatggccaagggctacgcaagcgac
gccaactacgactcggagccgttcccgccaccacccacgccgcgcagccagtacctgtca
gccgaggagaactgcgaaagctgcccgccctcgccgtacacagagcgcagctactcgcag
cacctgtaccctccgcctccctcaccctgcaccgactcgtcctga
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