Ictalurus punctatus (channel catfish): 108280546
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Entry
108280546 CDS
T04658
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108280546
03015 mRNA surveillance pathway
108280546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108280546
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108280546
5.6.2.5 RNA 5'-3' helicase
108280546
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108280546
mRNA cycle factors
Common to processing body (P body) and stress granule
108280546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
YusW
AAA_22
Motif
Other DBs
NCBI-GeneID:
108280546
NCBI-ProteinID:
XP_017351128
Ensembl:
ENSIPUG00000005108
UniProt:
W5UKX5
LinkDB
All DBs
Position
20:complement(20161748..20180293)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PEGVLQNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQIGMIGAGPNPMASMN
IPIPFNLVMPPMPPPGYLGQINGPAAGRGAPKGKTGGRGGRQRSRGMGNHGSGQTNMANS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagaggcgtacgggccgagctcgcagactctcaccttcctggacacggaggaa
gcggagctgctcggagccgacacgcagggctcggagttcgagtttaccgactttaccctg
ccgagccagacccaaacacaaggccaaacccagagccagctagacaaccaggtgaacggg
cctgaaggagttctgcagaacggtgatgatgctgtggtgaaaaccagtcaacttctggca
gagttgaatttcgaggaggatgaagaggacacctattacaccaaggatctccctgtgcac
gcctgcagttactgtggcattcatgatcctgcctgtgtggtgtattgcaacactagcaag
aagtggttctgcaatggacgtggcaacacctctggcagccatatcgtcaaccatttggtg
cgtgccaaatgtaaggaggttaccctgcataaagatggtcctttgggggagaccgtgttg
gagtgttacaactgtggctgtcgtaacgttttccttctgggtttcattccagccaaggcc
gattctgtcgtggtgctcctgtgcaggcagccatgtgccagtcagagcagtctgaaggac
attaactgggacagctcccagtggcagcctttgatccaggaccggtgctttctgtcctgg
ctggtgaagattccatctgagcaggagcaactcagggcacgccagatcaccgcccagcag
atcaacaaactggaggagctctggaaggagaatccaactgcgacgcttgaggatttggag
aagcctggcgtggatgaagagcctcagcatgtgctgctccgctatgaggatgcctaccag
tatcagaacatctttggcccgttggtcaaactggaggcagactatgacaagaagcttaaa
gagtcccagacccaagacaatataactgtcaggtgggacttgggactgaataaaaaaagg
attgcttatttcacccttcccaagacggattcaggtgacatgcgtcttatgcaaggggat
gagatctgcctacgttacaaaggagacttggctcctctctggaagggtatcggacatgta
atcaaggtcccggataactatggagatgagattgcgatagaactgaggagcagtgctgga
gctcctgtggaggtgccccacaacttccaggtggactttgtctggaaatccacttccttt
gaccgcatgcagagtgccctgaaaacgtttgcagtagatgagacatccgtgtctggttac
atctatcacaagttgcttggccatgaggtagaggacgtgatcattaagtgccagttaccc
aagcgtttcactgcccagggcctgcctgacctcaaccactcacaggtgtatgctgttaaa
acggtgctccagcgtcccctcagtctgatccaggggcctcctggtactggcaaaactgtt
acctcagcaactattgtttaccacctggctagacagggcaacgggccggttctggtatgc
gctcccagcaatatcgcggtggaccagctgacagagaaaattcaccaaacaggactgaaa
gtggtgcgtctttgtgccaagagccgagaggccatcgactctcctgtgtccttcctggct
cttcacaaccagattcgcaacatggacagcatgccagaactgcaaaagctgcaacagctg
aaggatgaaacaggagagctgtcttcctcggatgagaagcgctacagggccctgaaacgc
actgcagaacgggagctactcatgaatgcagatgtgatctgttgtacttgtgtgggtgcg
ggtgatcctcgtctggctaaaatgcagttccgctccatcctgatagatgagagtacccag
gctactgagccggaatgcatggtgccagtagtgctgggagccaagcagctgatcctggtg
ggtgatcactgccagctcggtccagtggtcatgtgtaaaaaggctgctaaggcgggtctg
tcccagtctcttttcgagagactggtggtgctgggcatcagacccatccgccttcaagtg
cagtatcgtatgcaccctgcactcagcgctttcccctccaatatcttctatgaaggatct
ctccagaatggagtcactgctgctgaccgcatcaagaagggctttgatttccagtggcct
cagccagataagcccatgttcttctatgtgacacagggccaggaagagattgccagctca
ggcacctcctatcttaacaggactgaggctgctaatgtggagaaaatcaccactcgcctt
ttgaaggccggagccaaacctgaccagatcggcataatcactccatacgagggccagcgc
tcctacctggtgcagtacatgcagttcagcggttctcttcatactaagctctaccaggag
gtagagatagccagcgtggatgccttccagggtcgtgagaaggacttcattattctatcc
tgtgtccgggccaatgagcaccaaggcatcggctttcttaatgatccacgcaggctgaac
gtggccctcaccagagccaggtacggtgtgatcattgtggggaatcctaaagctctgtct
aaacagccactctggaaccacctgctgaactactacaaggagcagaaggttctggtggag
gggcccctcaacaacctgagagagagcctcatgcagttcagcaaacctcgcaagctcgtc
aacaccatcaaccctggagctcgttttatgagcactgcaatgtatgatgccagggaggcc
atgatccctggctctgtgtatgaccggagcaacactggtcgtccgtcgaacatgtatttc
caaactcacgaccagatcgggatgattggagcagggccgaaccctatggcctcaatgaat
attcccatacccttcaacctggtcatgccccccatgcccccaccgggttacctgggccag
attaatggcccggctgctggccgcggagctccaaagggtaagacgggtgggcgtggtgga
cgtcagaggagtcgtggcatgggtaaccatggcagtggacagacgaacatggcgaacagc
caggccagtcaggatctggtgtctcagcccttctcccagggccccctcacccagggctac
attaccatgagccagccctcacagatgagccagccaggcctgtcccagcctgaactatcc
caggacagttacctgggtgatgagttcaagtctcagatggatgtggctctgtcccaggat
tccacttaccagggtgaacgggcataccagcacggaggagtgaccggactctctcagtac
tag
DBGET
integrated database retrieval system
