Ictalurus punctatus (channel catfish): 108281098
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Entry
108281098 CDS
T04658
Name
(RefSeq) proteoglycan 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108281098
09123 Folding, sorting and degradation
03018 RNA degradation
108281098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108281098
03041 Spliceosome [BR:
ipu03041
]
108281098
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108281098
mRNA cycle factors
Stress granule specific factors
108281098
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108281098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
VitK2_biosynth
Motif
Other DBs
NCBI-GeneID:
108281098
NCBI-ProteinID:
XP_053529959
UniProt:
A0A9F7QTS8
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All DBs
Position
21:7257781..7260142
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AA seq
438 aa
AA seq
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MEAEDVEPSTVPTPTPLTWAQIVKQKKKQPEEVKEKKEKITESREQKMQAEVNQQVPDKV
KKFPTPTTLTGCEIMEAKEAEPSTVPTPTPLTSAQIVRQKKKQPEEVKEKKEKITESREQ
KMQAEVNQQLPDKVKKFPTPTTLTGCEIMEAKEAEQSTVPTPTPLTSAQIVRQKKKQPEE
VKEKKEKITESREQKMQAEVNQQLPDKVKFPTPTPLTGCEIMEAKEAEPSIVPTPTTLTG
GEIVDKEEAEPSTPPTPIPLTWAEIVKQNTKQPEEVEEKKEKIKESREQKMQAEVNQQLP
YKMKKLPMESHNRKNNKSVELFIRNLDYSLDDKRLYKEFLQFGAVISAKVVMENGCSKGF
GFVSYSTSTEAMEAIKGMNGKILGRRLVYVALSKSREEHKPFLTQTEQKTWSSRPTNPRQ
SKHKDTQRENTFECNNMI
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagaggatgtcgagccatccacagtcccaactcctacacctctcacatgggct
cagattgtgaaacagaaaaagaaacagcctgaggaggttaaggagaagaaggagaaaatc
acggagtccagggagcagaagatgcaggctgaagtcaaccagcaggtgccagataaggtg
aagaagttcccaactcctacaactctcacagggtgtgagattatggaggcaaaggaggcc
gagccatccacagtcccaactcctacacctctcacatcggctcagattgtgagacagaaa
aagaaacagcctgaggaggttaaggagaagaaggagaaaatcacggagtccagggagcag
aagatgcaggctgaagtcaaccagcagctgccagataaggtgaagaagttcccaactcct
acaactctcacagggtgtgagattatggaggcaaaggaggccgagcaatccacagtccca
actcctacacctctcacatcggctcagattgtgagacagaaaaagaaacagcctgaggag
gttaaggagaagaaggagaaaatcacggagtccagggagcagaagatgcaggctgaagtc
aaccaacagctgccagataaggtgaagttcccaactccaacacctctcacagggtgtgag
attatggaggcaaaggaggccgagccatccatagtcccaactcctacaactcttacaggg
ggtgaaattgtggataaagaagaggctgagccatccacacccccaactcctatacctctc
acatgggctgagattgtaaaacagaatacaaaacagcctgaggaggttgaggagaagaag
gagaaaattaaggagtccagggagcagaagatgcaggctgaagtcaaccagcagctgcca
tataaaatgaagaagctccctatggagtctcacaacaggaagaacaacaagagtgtcgaa
ctgttcataaggaatctggactacagcctggacgacaagcgcctgtacaaagagttcctc
caattcggagccgtcatcagtgcaaaggtggtgatggagaacggctgctcaaaaggattt
ggctttgttagctattcgacaagtacggaagccatggaggccattaaaggaatgaatggc
aagatcttgggcaggaggttggtgtatgtagctctgtctaagagcagagaggaacacaag
cctttcctcacccagacagagcagaagacatggagcagccggcctaccaacccccggcag
agtaaacacaaggacacacagagagagaatacttttgaatgcaataatatgatctag
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integrated database retrieval system
